ENSG00000115414


Homo sapiens

Features
Gene ID: ENSG00000115414
  
Biological name :FN1
  
Synonyms : fibronectin 1 / FN1 / P02751
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: q35
Gene start: 215360440
Gene end: 215436172
  
Corresponding Affymetrix probe sets: 1558199_at (Human Genome U133 Plus 2.0 Array)   210495_x_at (Human Genome U133 Plus 2.0 Array)   211719_x_at (Human Genome U133 Plus 2.0 Array)   212464_s_at (Human Genome U133 Plus 2.0 Array)   214701_s_at (Human Genome U133 Plus 2.0 Array)   214702_at (Human Genome U133 Plus 2.0 Array)   216442_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000416139
Ensembl peptide - ENSP00000410422
Ensembl peptide - ENSP00000415018
Ensembl peptide - ENSP00000323534
Ensembl peptide - ENSP00000338200
Ensembl peptide - ENSP00000346839
Ensembl peptide - ENSP00000348285
Ensembl peptide - ENSP00000350534
Ensembl peptide - ENSP00000352696
Ensembl peptide - ENSP00000392565
Ensembl peptide - ENSP00000394423
Ensembl peptide - ENSP00000398907
Ensembl peptide - ENSP00000399538
NCBI entrez gene - 2335     See in Manteia.
OMIM - 135600
RefSeq - XM_017003695
RefSeq - XM_005246405
RefSeq - XM_005246406
RefSeq - XM_005246407
RefSeq - XM_005246408
RefSeq - XM_005246409
RefSeq - XM_005246410
RefSeq - XM_005246411
RefSeq - XM_005246412
RefSeq - XM_005246414
RefSeq - XM_005246416
RefSeq - XM_017003692
RefSeq - XM_017003693
RefSeq - XM_017003694
RefSeq - NM_001306129
RefSeq - NM_001306130
RefSeq - NM_001306131
RefSeq - NM_001306132
RefSeq - NM_002026
RefSeq - NM_054034
RefSeq - NM_212474
RefSeq - NM_212476
RefSeq - NM_212478
RefSeq - NM_212482
RefSeq - XM_005246397
RefSeq - XM_005246398
RefSeq - XM_005246399
RefSeq - XM_005246401
RefSeq - XM_005246402
RefSeq - XM_005246403
RefSeq - XM_005246404
RefSeq Peptide - NP_001293059
RefSeq Peptide - NP_001293060
RefSeq Peptide - NP_001293061
RefSeq Peptide - NP_002017
RefSeq Peptide - NP_473375
RefSeq Peptide - NP_997639
RefSeq Peptide - NP_997641
RefSeq Peptide - NP_997643
RefSeq Peptide - NP_997647
RefSeq Peptide - NP_001293058
swissprot - H0Y4K8
swissprot - H0Y7Z1
swissprot - P02751
Ensembl - ENSG00000115414
  
Related genetic diseases (OMIM): 184255 - Spondylometaphyseal dysplasia, corner fracture type, 184255
  601894 - Glomerulopathy with fibronectin deposits 2, 601894
  614101 - Plasma fibronectin deficiency, 614101
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 fn1aENSDARG00000019815Danio rerio
 fn1bENSDARG00000006526Danio rerio
 FN1ENSGALG00000003578Gallus gallus
 Fn1ENSMUSG00000026193Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TNC / P24821 / tenascin CENSG0000004198216
TNR / Q92752 / tenascin RENSG0000011614713
TNN / Q9UQP3 / tenascin NENSG0000012033213
TNXB / P22105 / tenascin XBENSG000001684775
FGA / P02671 / fibrinogen alpha chainENSG000001715605
FGB / P02675 / fibrinogen beta chainENSG000001715644
Q86XS5 / ANGPTL5 / angiopoietin like 5ENSG000001871513
Q9Y5C1 / ANGPTL3 / angiopoietin like 3ENSG000001328553
FGG / P02679 / fibrinogen gamma chainENSG000001715573
Q9BY76 / ANGPTL4 / angiopoietin like 4ENSG000001677723
FGL1 / Q08830 / fibrinogen like 1ENSG000001047602


Protein motifs (from Interpro)
Interpro ID Name
 IPR000083  Fibronectin, type I
 IPR000562  Fibronectin type II domain
 IPR003961  Fibronectin type III
 IPR013783  Immunoglobulin-like fold
 IPR013806  Kringle-like fold
 IPR036116  Fibronectin type III superfamily
 IPR036943  Fibronectin type II domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001525 angiogenesis IEA
 biological_processGO:0001932 regulation of protein phosphorylation IDA
 biological_processGO:0002576 platelet degranulation TAS
 biological_processGO:0006953 acute-phase response IEA
 biological_processGO:0007044 cell-substrate junction assembly IEA
 biological_processGO:0007155 cell adhesion NAS
 biological_processGO:0007160 cell-matrix adhesion IEA
 biological_processGO:0007161 calcium-independent cell-matrix adhesion IEA
 biological_processGO:0008284 positive regulation of cell proliferation IDA
 biological_processGO:0008360 regulation of cell shape IEA
 biological_processGO:0009611 response to wounding NAS
 biological_processGO:0010628 positive regulation of gene expression IDA
 biological_processGO:0010952 positive regulation of peptidase activity IEA
 biological_processGO:0018149 peptide cross-linking IDA
 biological_processGO:0019221 cytokine-mediated signaling pathway TAS
 biological_processGO:0022617 extracellular matrix disassembly TAS
 biological_processGO:0030198 extracellular matrix organization TAS
 biological_processGO:0033622 integrin activation IMP
 biological_processGO:0034446 substrate adhesion-dependent cell spreading IMP
 biological_processGO:0035987 endodermal cell differentiation IDA
 biological_processGO:0042060 wound healing IEA
 biological_processGO:0043687 post-translational protein modification TAS
 biological_processGO:0044267 cellular protein metabolic process TAS
 biological_processGO:0045773 positive regulation of axon extension IEA
 biological_processGO:0048146 positive regulation of fibroblast proliferation IDA
 biological_processGO:0050900 leukocyte migration TAS
 biological_processGO:0051702 interaction with symbiont IDA
 biological_processGO:0052047 interaction with other organism via secreted substance involved in symbiotic interaction IDA
 biological_processGO:0070372 regulation of ERK1 and ERK2 cascade IDA
 biological_processGO:1904237 positive regulation of substrate-dependent cell migration, cell attachment to substrate IDA
 biological_processGO:2001202 negative regulation of transforming growth factor-beta secretion IDA
 cellular_componentGO:0005576 extracellular region IDA
 cellular_componentGO:0005577 fibrinogen complex IDA
 cellular_componentGO:0005604 basement membrane IEA
 cellular_componentGO:0005605 basal lamina IEA
 cellular_componentGO:0005615 extracellular space IDA
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0005793 endoplasmic reticulum-Golgi intermediate compartment IDA
 cellular_componentGO:0016324 apical plasma membrane IEA
 cellular_componentGO:0031012 extracellular matrix ISS
 cellular_componentGO:0031093 platelet alpha granule lumen TAS
 cellular_componentGO:0070062 extracellular exosome IDA
 cellular_componentGO:0072562 blood microparticle HDA
 molecular_functionGO:0002020 protease binding IPI
 molecular_functionGO:0005102 signaling receptor binding IPI
 molecular_functionGO:0005178 integrin binding IPI
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005518 collagen binding NAS
 molecular_functionGO:0008022 protein C-terminus binding IPI
 molecular_functionGO:0008201 heparin binding NAS
 molecular_functionGO:0016504 peptidase activator activity IEA
 molecular_functionGO:0019899 enzyme binding IPI
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0051087 chaperone binding IPI
 molecular_functionGO:0097718 disordered domain specific binding IPI


Pathways (from Reactome)
Pathway description
Platelet degranulation
Degradation of the extracellular matrix
Extracellular matrix organization
Fibronectin matrix formation
Cell surface interactions at the vascular wall
Molecules associated with elastic fibres
Integrin cell surface interactions
Syndecan interactions
Non-integrin membrane-ECM interactions
ECM proteoglycans
Integrin alphaIIb beta3 signaling
GRB2:SOS provides linkage to MAPK signaling for Integrins
p130Cas linkage to MAPK signaling for integrins
Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)
MAP2K and MAPK activation
Interleukin-4 and Interleukin-13 signaling
Signaling by moderate kinase activity BRAF mutants
Signaling by high-kinase activity BRAF mutants
Signaling by RAS mutants
Signaling by BRAF and RAF fusions
Paradoxical activation of RAF signaling by kinase inactive BRAF
MET activates PTK2 signaling
Post-translational protein phosphorylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000093 Proteinuria 
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 HP:0000100 Nephrotic syndrome 
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0001342 Cerebral hemorrhage "A cerebral hemorrhage (or intracerebral hemorrhage, ICH), is a type of intracranial hemorrhage that occurs within the brain tissue itself." [HPO:curators]
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 HP:0001636 Tetralogy of Fallot "A congenital cardiac malformation comprising pulmonary stenosis, overriding aorta, ventricular septum defect, and right ventricular hypertrophy. The diagnosis of TOF is made if at least three of the four above mentioned features are present." [HPO:curators]
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 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
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 HP:0001966 Mesangial abnormality 
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 HP:0002515 Waddling gait 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002657 Spondylometaphyseal dysplasia 
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 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
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 HP:0002808 Kyphosis 
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 HP:0002812 Coxa vara 
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 HP:0002857 Genu valgum 
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 HP:0002907 Microscopic hematuria 
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 HP:0002983 Micromelia 
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 HP:0003019 Abnormality of the wrist "Abnormalitly of the wrist, the structure connecting the hand and the forearm." [HPO:curators]
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 HP:0003025 Irregular metaphyses 
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 HP:0003073 Hypoalbuminemia "Reduction in the concentration of albumin in the blood." [HPO:curators]
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 HP:0003300 Ovoid vertebral bodies 
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 HP:0003307 Hyperlordosis 
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 HP:0003311 Hypoplastic odontoid process 
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 HP:0003502 Mild short stature "A mild degree of short stature." [HPO:curators]
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 HP:0003677 Slow progression 
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 HP:0003774 End stage renal disease 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004603 Hyperconvex vertebral body endplates 
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 HP:0004916 generalized distal tubular acidosis 
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 HP:0005584 Renal cell carcinoma "Renal cell carcinoma (also known as hypernephroma) is the most common form of kidney cancer arising from the proximal renal tubule. The tissue of origin for renal cell carcinoma is the proximal renal tubular epithelium. Renal cell carcinoma can be classified as 1) clear cell carcinoma, 2) papillary carcinoma, 3) chromophobe renal carcinoma, and 4) collecting duct carcinoma." [HPO:curators]
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 HP:0010741 Edema of the lower limbs 
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 HP:0100820 Glomerulopathy "Inflammatory or noninflammatory diseases affecting the glomeruli of the nephron." [HPO:sdoelken]
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 HP:0100864 Hypoplasia of the femoral neck 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000050820 BCAR1 / P56945 / BCAR1, Cas family scaffolding protein  / complex / reaction
 ENSG00000035403 VCL / P18206 / vinculin  / complex
 ENSG00000103653 CSK / P41240 / C-terminal Src kinase  / reaction / complex
 ENSG00000116147 TNR / Q92752 / tenascin R  / reaction / complex
 ENSG00000005961 ITGA2B / P08514 / integrin subunit alpha 2b  / reaction / complex
 ENSG00000077942 FBLN1 / P23142 / fibulin 1  / complex / reaction
 ENSG00000163520 FBLN2 / P98095 / fibulin 2  / reaction / complex
 ENSG00000161638 ITGA5 / P08648 / integrin subunit alpha 5  / reaction / complex
 ENSG00000150093 ITGB1 / P05556 / integrin subunit beta 1  / reaction / complex
 ENSG00000177885 GRB2 / P62993 / growth factor receptor bound protein 2  / reaction / complex
 ENSG00000197122 SRC / P12931 / SRC proto-oncogene, non-receptor tyrosine kinase  / reaction / complex
 ENSG00000077420 Q7Z5R6 / APBB1IP / amyloid beta precursor protein binding family B member 1 interacting protein  / reaction / complex
 ENSG00000137076 TLN1 / Q9Y490 / talin 1  / reaction / complex
 ENSG00000259207 ITGB3 / P05106 / integrin subunit beta 3  / complex / reaction
 ENSG00000115414 FN1 / P02751 / fibronectin 1  / complex / reaction / -
 ENSG00000116473 RAP1A / P62834 / RAP1A, member of RAS oncogene family  / reaction / complex
 ENSG00000167193 CRK / P46108 / CRK proto-oncogene, adaptor protein  / complex / reaction
 ENSG00000127314 RAP1B / P61224 / RAP1B, member of RAS oncogene family  / complex / reaction
 ENSG00000115904 SOS1 / Q07889 / SOS Ras/Rac guanine nucleotide exchange factor 1  / reaction / complex
 ENSG00000041982 TNC / P24821 / tenascin C  / complex / reaction
 ENSG00000169398 PTK2 / Q05397 / protein tyrosine kinase 2  / reaction / complex
 ENSG00000196396 PTPN1 / P18031 / protein tyrosine phosphatase, non-receptor type 1  / reaction
 ENSG00000165025 SYK / P43405 / spleen associated tyrosine kinase  / complex / reaction






 

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