ENSG00000035403


Homo sapiens

Features
Gene ID: ENSG00000035403
  
Biological name :VCL
  
Synonyms : P18206 / VCL / vinculin
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: 1
Band: q22.2
Gene start: 73995193
Gene end: 74121363
  
Corresponding Affymetrix probe sets: 200930_s_at (Human Genome U133 Plus 2.0 Array)   200931_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000211998
Ensembl peptide - ENSP00000485551
Ensembl peptide - ENSP00000361841
NCBI entrez gene - 7414     See in Manteia.
OMIM - 193065
RefSeq - NM_003373
RefSeq - NM_014000
RefSeq Peptide - NP_003364
RefSeq Peptide - NP_054706
swissprot - V9HWK2
swissprot - A0A024QZN4
swissprot - P18206
swissprot - A0A096LPE1
Ensembl - ENSG00000035403
  
Related genetic diseases (OMIM): 611407 - Cardiomyopathy, dilated, 1W, 611407
  613255 - Cardiomyopathy, hypertrophic, 15, 613255
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vclaENSDARG00000098695Danio rerio
 vclaENSDARG00000044968Danio rerio
 VCLENSGALG00000005079Gallus gallus
 VclENSMUSG00000021823Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CTNNA1 / P35221 / catenin alpha 1ENSG0000004411519
CTNNA2 / P26232 / catenin alpha 2ENSG0000006603219
CTNNA3 / Q9UI47 / catenin alpha 3ENSG0000018323017
Q9UBT7 / CTNNAL1 / catenin alpha like 1ENSG0000011932611


Protein motifs (from Interpro)
Interpro ID Name
 IPR000633  Vinculin, conserved site
 IPR006077  Vinculin/alpha-catenin
 IPR017997  Vinculin
 IPR036723  Alpha-catenin/vinculin-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002009 morphogenesis of an epithelium IMP
 biological_processGO:0002576 platelet degranulation TAS
 biological_processGO:0006936 muscle contraction TAS
 biological_processGO:0007155 cell adhesion TAS
 biological_processGO:0007160 cell-matrix adhesion TAS
 biological_processGO:0030032 lamellipodium assembly ISS
 biological_processGO:0030334 regulation of cell migration IEA
 biological_processGO:0030336 negative regulation of cell migration TAS
 biological_processGO:0034333 adherens junction assembly IMP
 biological_processGO:0034394 protein localization to cell surface IMP
 biological_processGO:0043297 apical junction assembly IMP
 biological_processGO:0043312 neutrophil degranulation TAS
 biological_processGO:0048675 axon extension IEA
 biological_processGO:0070527 platelet aggregation HMP
 biological_processGO:0090136 epithelial cell-cell adhesion IMP
 cellular_componentGO:0002102 podosome IEA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005623 cell ISS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005856 cytoskeleton TAS
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005903 brush border ISS
 cellular_componentGO:0005911 cell-cell junction ISS
 cellular_componentGO:0005912 adherens junction ISS
 cellular_componentGO:0005913 cell-cell adherens junction IDA
 cellular_componentGO:0005915 zonula adherens ISS
 cellular_componentGO:0005916 fascia adherens IEA
 cellular_componentGO:0005925 focal adhesion ISS
 cellular_componentGO:0015629 actin cytoskeleton IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030055 cell-substrate junction NAS
 cellular_componentGO:0032991 protein-containing complex IDA
 cellular_componentGO:0034774 secretory granule lumen TAS
 cellular_componentGO:0035580 specific granule lumen TAS
 cellular_componentGO:0042383 sarcolemma ISS
 cellular_componentGO:0043034 costamere IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:0090636 outer dense plaque of desmosome ISS
 cellular_componentGO:0090637 inner dense plaque of desmosome ISS
 cellular_componentGO:1903561 extracellular vesicle HDA
 cellular_componentGO:1904813 ficolin-1-rich granule lumen TAS
 cellular_componentGO:1990357 terminal web ISS
 molecular_functionGO:0002162 dystroglycan binding IPI
 molecular_functionGO:0003779 actin binding IDA
 molecular_functionGO:0005198 structural molecule activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008013 beta-catenin binding ISS
 molecular_functionGO:0031625 ubiquitin protein ligase binding IPI
 molecular_functionGO:0045294 alpha-catenin binding IPI
 molecular_functionGO:0045296 cadherin binding ISS
 molecular_functionGO:0051015 actin filament binding IEA


Pathways (from Reactome)
Pathway description
Platelet degranulation
Smooth Muscle Contraction
MAP2K and MAPK activation
Neutrophil degranulation
Signaling by moderate kinase activity BRAF mutants
Signaling by high-kinase activity BRAF mutants
Signaling by RAS mutants
Signaling by BRAF and RAF fusions
Paradoxical activation of RAF signaling by kinase inactive BRAF


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000982 Palmoplantar keratoderma 
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 HP:0001635 Congestive heart failure "The presence of an abnormality of cardiac function that is responsible for the failure of the heart to pump blood at a rate that is commensurate with the needs of the tissues or a state in which abnormally elevated filling pressures are required for the heart to do so. Heart failure is frequently related to a defect in myocardial contraction." [HPO:curators]
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 HP:0001639 Hypertrophic cardiomyopathy 
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 HP:0001644 Dilated cardiomyopathy 
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 HP:0001874 Abnormality of neutrophil 
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 HP:0002094 Dyspnea 
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 HP:0003198 Myopathy 
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003457 Abnormal EMG findings "Abnormal results of investigations using electromyography (EMG)." [HPO:curators]
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 HP:0006685 Endocardial fibrosis "The presence of excessive connective tissue in the `endocardium` (FMA:7280)." [HPO:probinson]
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 HP:0100578 Lipoatrophy "Localized loss of fat tissue." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000116473 RAP1A / P62834 / RAP1A, member of RAS oncogene family  / complex
 ENSG00000110799 VWF / P04275 / von Willebrand factor  / complex
 ENSG00000197122 SRC / P12931 / SRC proto-oncogene, non-receptor tyrosine kinase  / complex
 ENSG00000171560 FGA / P02671 / fibrinogen alpha chain  / complex
 ENSG00000171564 FGB / P02675 / fibrinogen beta chain  / complex
 ENSG00000137076 TLN1 / Q9Y490 / talin 1  / complex
 ENSG00000115414 FN1 / P02751 / fibronectin 1  / complex
 ENSG00000259207 ITGB3 / P05106 / integrin subunit beta 3  / complex
 ENSG00000005961 ITGA2B / P08514 / integrin subunit alpha 2b  / complex
 ENSG00000077420 Q7Z5R6 / APBB1IP / amyloid beta precursor protein binding family B member 1 interacting protein  / complex
 ENSG00000171557 FGG / P02679 / fibrinogen gamma chain  / complex
 ENSG00000127314 RAP1B / P61224 / RAP1B, member of RAS oncogene family  / complex
 ENSG00000103653 CSK / P41240 / C-terminal Src kinase  / complex






 

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