ENSG00000127314


Homo sapiens

Features
Gene ID: ENSG00000127314
  
Biological name :RAP1B
  
Synonyms : P61224 / RAP1B / RAP1B, member of RAS oncogene family
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: 1
Band: q15
Gene start: 68610839
Gene end: 68671901
  
Corresponding Affymetrix probe sets: 200833_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000439966
Ensembl peptide - ENSP00000250559
Ensembl peptide - ENSP00000368270
Ensembl peptide - ENSP00000377085
Ensembl peptide - ENSP00000390972
Ensembl peptide - ENSP00000399986
Ensembl peptide - ENSP00000401095
Ensembl peptide - ENSP00000437415
Ensembl peptide - ENSP00000438088
Ensembl peptide - ENSP00000438311
Ensembl peptide - ENSP00000440014
Ensembl peptide - ENSP00000440466
Ensembl peptide - ENSP00000440635
Ensembl peptide - ENSP00000440708
Ensembl peptide - ENSP00000441275
Ensembl peptide - ENSP00000441952
Ensembl peptide - ENSP00000443775
Ensembl peptide - ENSP00000443851
Ensembl peptide - ENSP00000444060
Ensembl peptide - ENSP00000444467
Ensembl peptide - ENSP00000444786
Ensembl peptide - ENSP00000444830
Ensembl peptide - ENSP00000444924
Ensembl peptide - ENSP00000445090
Ensembl peptide - ENSP00000445138
Ensembl peptide - ENSP00000445977
Ensembl peptide - ENSP00000446027
Ensembl peptide - ENSP00000446318
NCBI entrez gene - 5908     See in Manteia.
OMIM - 179530
RefSeq - NM_001010942
RefSeq - NM_001251918
RefSeq - NM_001251922
RefSeq - NM_001251921
RefSeq - NM_015646
RefSeq - NM_001251917
RefSeq Peptide - NP_001238847
RefSeq Peptide - NP_001238850
RefSeq Peptide - NP_001238851
RefSeq Peptide - NP_056461
RefSeq Peptide - NP_001010942
RefSeq Peptide - NP_001238846
swissprot - F5H004
swissprot - F5H077
swissprot - F5H0B7
swissprot - F5H0S2
swissprot - F5H491
swissprot - F5H4H0
swissprot - F5GYB5
swissprot - F5H500
swissprot - F5H6R7
swissprot - F5H7Y6
swissprot - F5H823
swissprot - F8WBC0
swissprot - E7ESV4
swissprot - B7ZB78
swissprot - A0A024RB87
swissprot - F5GX62
swissprot - F5GWU8
swissprot - P61224
swissprot - F5GYH7
swissprot - F5GZG1
Ensembl - ENSG00000127314
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rap1aaENSDARG00000012553Danio rerio
 rap1abENSDARG00000087346Danio rerio
 rap1bENSDARG00000008867Danio rerio
 RAP1BENSGALG00000009927Gallus gallus
 Rap1bENSMUSG00000052681Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RAP1A / P62834 / RAP1A, member of RAS oncogene familyENSG0000011647395
RAP2C / Q9Y3L5 / RAP2C, member of RAS oncogene familyENSG0000012372860
RAP2A / P10114 / RAP2A, member of RAS oncogene familyENSG0000012524960
RAP2B / P61225 / RAP2B, member of RAS oncogene familyENSG0000018146760
RIT1 / Q92963 / Ras like without CAAX 1ENSG0000014362249
RIT2 / Q99578 / Ras like without CAAX 2ENSG0000015221446
DIRAS2 / Q96HU8 / DIRAS family GTPase 2ENSG0000016502343
DIRAS1 / O95057 / DIRAS family GTPase 1ENSG0000017649041
RASD2 / Q96D21 / RASD family member 2ENSG0000010030238
RASD1 / Q9Y272 / ras related dexamethasone induced 1ENSG0000010855137
DIRAS3 / O95661 / DIRAS family GTPase 3ENSG0000016259534
Q92737 / RASL10A / RAS like family 10 member AENSG0000010027630
Q96S79 / RASL10B / RAS like family 10 member BENSG0000027088530


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR020849  Small GTPase superfamily, Ras-type
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007264 small GTPase mediated signal transduction IEA
 biological_processGO:0008283 cell proliferation IEA
 biological_processGO:0009743 response to carbohydrate IEA
 biological_processGO:0032486 Rap protein signal transduction IMP
 biological_processGO:0035690 cellular response to drug IEA
 biological_processGO:0035722 interleukin-12-mediated signaling pathway TAS
 biological_processGO:0043312 neutrophil degranulation TAS
 biological_processGO:0045955 negative regulation of calcium ion-dependent exocytosis IEA
 biological_processGO:0061028 establishment of endothelial barrier IMP
 biological_processGO:0070374 positive regulation of ERK1 and ERK2 cascade IEA
 biological_processGO:0071320 cellular response to cAMP IDA
 biological_processGO:0071407 cellular response to organic cyclic compound IEA
 biological_processGO:0097211 cellular response to gonadotropin-releasing hormone IEA
 biological_processGO:1901888 regulation of cell junction assembly IMP
 biological_processGO:2000114 regulation of establishment of cell polarity IMP
 biological_processGO:2000301 negative regulation of synaptic vesicle exocytosis IEA
 cellular_componentGO:0005622 intracellular IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005811 lipid droplet IDA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005911 cell-cell junction IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0035577 azurophil granule membrane TAS
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005525 GTP binding IEA
 molecular_functionGO:0019003 GDP binding IDA
 molecular_functionGO:0044877 protein-containing complex binding IDA


Pathways (from Reactome)
Pathway description
Integrin alphaIIb beta3 signaling
GRB2:SOS provides linkage to MAPK signaling for Integrins
p130Cas linkage to MAPK signaling for integrins
Rap1 signalling
MAP2K and MAPK activation
Neutrophil degranulation
Signaling by moderate kinase activity BRAF mutants
Signaling by high-kinase activity BRAF mutants
Signaling by RAS mutants
Signaling by BRAF and RAF fusions
Paradoxical activation of RAF signaling by kinase inactive BRAF
MET activates RAP1 and RAC1
Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000074 Ureteropelvic junction obstruction 
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 HP:0000081 Duplicated collecting system 
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 HP:0000126 Hydronephrosis 
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000238 Hydrocephalus 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000298 Mask-like facies 
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 HP:0000384 Preauricular skin tag "A rudimentary tag of ear tissue often containing a core of cartilage and located just in front of the auricle (outer part of the ear)." [HPO:curators]
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 HP:0000400 Large ears 
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000411 Protruding ears 
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 HP:0000482 Microcornea "A congenital abnormality of the `cornea` (FMA:58238) in which the cornea and the anterior segment of the eye are smaller than normal. The horizontal diameter of the cornea does not reach 10 mm even in adulthood." [HPO:probinson]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000527 Long eyelashes "Mid upper eyelash length >10 mm or increased length of the eyelashes (subjective)." [pmid:19125427]
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 HP:0000589 Coloboma "A developmental defect characterized by a cleft of some portion of the `eye` (FMA:54448`) or ocular adnexa." [HPO:probinson]
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 HP:0000592 Blue sclerae 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000687 Widely spaced teeth 
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 HP:0000691 Microdontia 
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 HP:0000776 Diaphragmatic hernia "Diaphragmatic hernia is the result of a developmental defect causing an abnormal opening in the diaphragm, through which abdominal organs (stomach, spleen, liver, and intestines) can protrude into the thoracic cavity. This usually causes respiratory distress in the newborn period." [HPO:curators]
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 HP:0000826 Precocious puberty "The onset of secondary sexual characteristics before a normal age. Although it is difficult to define normal age ranges because of the marked variation with which puberty begins in normal children, precocious puberty can be defined as the onset of puberty before the age of 8 years in girls or 9 years in boys." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0001671 Abnormality of the cardiac septa 
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 HP:0001680 Coarctation of aorta "Coarctation of the aorta is a narrowing or constriction of the aorta just distal to the origin of the left subclavian artery." [HPO:curators]
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 HP:0002000 Columella, short "Reduced distance from the anterior border of the naris to the subnasale." [pmid:19152422]
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 HP:0002119 Ventriculomegaly 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002553 Arched eyebrows 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002719 Recurrent infections 
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 HP:0002827 Dislocated hips 
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 HP:0002937 Hemivertebrae 
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 HP:0003316 Butterfly vertebrae 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004736 Ectopic kidney with fusion 
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 HP:0005338 Sparse lateral eyebrows 
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 HP:0005692 Joint hyperflexibility 
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 HP:0005819 Abnormally short and broad middle phalanges 
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 HP:0007477 Abnormal dermatoglyphics "An abnormality of dermatoglyphs (fingerprints), which are present on fingers, palms, toes, and soles." [HPO:curators]
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 HP:0007655 Eversion of lateral third of lower eyelids 
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 HP:0008678 Renal hypoplasia/aplasia 
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 HP:0008736 Hypoplasia of penis 
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 HP:0009237 Hypoplastic/small 5th finger "Hypoplastic/small 5th (little) finger." [HPO:curators]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0100267 Lip pits 
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 HP:0200055 Small hands 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000050820 BCAR1 / P56945 / BCAR1, Cas family scaffolding protein  / complex / reaction
 ENSG00000035403 VCL / P18206 / vinculin  / complex
 ENSG00000103653 CSK / P41240 / C-terminal Src kinase  / complex / reaction
 ENSG00000177885 GRB2 / P62993 / growth factor receptor bound protein 2  / complex / reaction
 ENSG00000167193 CRK / P46108 / CRK proto-oncogene, adaptor protein  / complex / reaction
 ENSG00000137076 TLN1 / Q9Y490 / talin 1  / reaction / complex
 ENSG00000115904 SOS1 / Q07889 / SOS Ras/Rac guanine nucleotide exchange factor 1  / complex / reaction
 ENSG00000132155 RAF1 / P04049 / Raf-1 proto-oncogene, serine/threonine kinase  / reaction / complex
 ENSG00000110799 VWF / P04275 / von Willebrand factor  / complex / reaction
 ENSG00000005961 ITGA2B / P08514 / integrin subunit alpha 2b  / reaction / complex
 ENSG00000132359 Q684P5 / RAP1GAP2 / RAP1 GTPase activating protein 2  / reaction
 ENSG00000076864 P47736 / RAP1GAP / RAP1 GTPase activating protein  / reaction
 ENSG00000172575 O95267 / RASGRP1 / RAS guanyl releasing protein 1  / reaction
 ENSG00000171560 FGA / P02671 / fibrinogen alpha chain  / reaction / complex
 ENSG00000171564 FGB / P02675 / fibrinogen beta chain  / reaction / complex
 ENSG00000115414 FN1 / P02751 / fibronectin 1  / complex / reaction
 ENSG00000169398 PTK2 / Q05397 / protein tyrosine kinase 2  / complex / reaction
 ENSG00000171557 FGG / P02679 / fibrinogen gamma chain  / complex / reaction
 ENSG00000077420 Q7Z5R6 / APBB1IP / amyloid beta precursor protein binding family B member 1 interacting protein  / reaction / complex
 ENSG00000068831 Q7LDG7 / RASGRP2 / RAS guanyl releasing protein 2  / reaction
 ENSG00000197122 SRC / P12931 / SRC proto-oncogene, non-receptor tyrosine kinase  / complex / reaction
 ENSG00000160691 SHC1 / P29353 / SHC adaptor protein 1  / complex / reaction
 ENSG00000107263 Q13905 / RAPGEF1 / Rap guanine nucleotide exchange factor 1  / reaction
 ENSG00000196396 PTPN1 / P18031 / protein tyrosine phosphatase, non-receptor type 1  / reaction
 ENSG00000165025 SYK / P43405 / spleen associated tyrosine kinase  / reaction / complex
 ENSG00000079337 O95398 / RAPGEF3 / Rap guanine nucleotide exchange factor 3  / reaction
 ENSG00000091428 Q8WZA2 / RAPGEF4 / Rap guanine nucleotide exchange factor 4  / reaction
 ENSG00000213445 SIPA1 / Q96FS4 / signal-induced proliferation-associated 1  / reaction
 ENSG00000259207 ITGB3 / P05106 / integrin subunit beta 3  / complex / reaction






 

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