ENSG00000116473


Homo sapiens

Features
Gene ID: ENSG00000116473
  
Biological name :RAP1A
  
Synonyms : P62834 / RAP1A / RAP1A, member of RAS oncogene family
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: p13.2
Gene start: 111542218
Gene end: 111716691
  
Corresponding Affymetrix probe sets: 1555339_at (Human Genome U133 Plus 2.0 Array)   1555340_x_at (Human Genome U133 Plus 2.0 Array)   202362_at (Human Genome U133 Plus 2.0 Array)   228548_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000358723
Ensembl peptide - ENSP00000396741
Ensembl peptide - ENSP00000348786
NCBI entrez gene - 5906     See in Manteia.
OMIM - 179520
RefSeq - XM_017001964
RefSeq - NM_001291896
RefSeq - NM_002884
RefSeq - XM_017001960
RefSeq - XM_017001961
RefSeq - XM_017001962
RefSeq - XM_017001963
RefSeq - NM_001010935
RefSeq Peptide - NP_002875
RefSeq Peptide - NP_001010935
RefSeq Peptide - NP_001278825
swissprot - A8KAH9
swissprot - P62834
swissprot - A0A075B6Q0
Ensembl - ENSG00000116473
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RAP1AENSGALG00000001476Gallus gallus
 Rap1aENSMUSG00000068798Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RAP1B / P61224 / RAP1B, member of RAS oncogene familyENSG0000012731495
RAP2A / P10114 / RAP2A, member of RAS oncogene familyENSG0000012524961
RAP2B / P61225 / RAP2B, member of RAS oncogene familyENSG0000018146761
RAP2C / Q9Y3L5 / RAP2C, member of RAS oncogene familyENSG0000012372861
RIT1 / Q92963 / Ras like without CAAX 1ENSG0000014362249
RIT2 / Q99578 / Ras like without CAAX 2ENSG0000015221447
DIRAS2 / Q96HU8 / DIRAS family GTPase 2ENSG0000016502343
DIRAS1 / O95057 / DIRAS family GTPase 1ENSG0000017649041
RASD1 / Q9Y272 / ras related dexamethasone induced 1ENSG0000010855138
RASD2 / Q96D21 / RASD family member 2ENSG0000010030238
DIRAS3 / O95661 / DIRAS family GTPase 3ENSG0000016259534
Q92737 / RASL10A / RAS like family 10 member AENSG0000010027630
Q96S79 / RASL10B / RAS like family 10 member BENSG0000027088530


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR020849  Small GTPase superfamily, Ras-type
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000186 activation of MAPKK activity TAS
 biological_processGO:0007165 signal transduction TAS
 biological_processGO:0007264 small GTPase mediated signal transduction IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0009743 response to carbohydrate IEA
 biological_processGO:0010976 positive regulation of neuron projection development ISS
 biological_processGO:0015031 protein transport IDA
 biological_processGO:0032486 Rap protein signal transduction IMP
 biological_processGO:0032966 negative regulation of collagen biosynthetic process IEA
 biological_processGO:0035690 cellular response to drug IEA
 biological_processGO:0038180 nerve growth factor signaling pathway ISS
 biological_processGO:0043312 neutrophil degranulation TAS
 biological_processGO:0043547 positive regulation of GTPase activity IEA
 biological_processGO:0045860 positive regulation of protein kinase activity ISS
 biological_processGO:0046326 positive regulation of glucose import IEA
 biological_processGO:0050796 regulation of insulin secretion TAS
 biological_processGO:0061028 establishment of endothelial barrier IMP
 biological_processGO:0070374 positive regulation of ERK1 and ERK2 cascade ISS
 biological_processGO:0071320 cellular response to cAMP IDA
 biological_processGO:0071333 cellular response to glucose stimulus IEA
 biological_processGO:0071407 cellular response to organic cyclic compound IEA
 biological_processGO:0097327 response to antineoplastic agent IEA
 biological_processGO:0097421 liver regeneration IEA
 biological_processGO:1901888 regulation of cell junction assembly IMP
 biological_processGO:1905451 positive regulation of Fc-gamma receptor signaling pathway involved in phagocytosis IEA
 biological_processGO:1990090 cellular response to nerve growth factor stimulus ISS
 biological_processGO:2000301 negative regulation of synaptic vesicle exocytosis IEA
 biological_processGO:2001214 positive regulation of vasculogenesis ISS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005769 early endosome ISS
 cellular_componentGO:0005770 late endosome IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030054 cell junction ISS
 cellular_componentGO:0032045 guanyl-nucleotide exchange factor complex IEA
 cellular_componentGO:0035579 specific granule membrane TAS
 cellular_componentGO:0043005 neuron projection IEA
 cellular_componentGO:0043209 myelin sheath IEA
 cellular_componentGO:0045335 phagocytic vesicle IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005525 GTP binding IEA
 molecular_functionGO:0008565 protein transporter activity IDA
 molecular_functionGO:0017016 Ras GTPase binding IEA
 molecular_functionGO:0017034 Rap guanyl-nucleotide exchange factor activity ISS
 molecular_functionGO:0044877 protein-containing complex binding IDA


Pathways (from Reactome)
Pathway description
Frs2-mediated activation
ARMS-mediated activation
Integrin alphaIIb beta3 signaling
GRB2:SOS provides linkage to MAPK signaling for Integrins
p130Cas linkage to MAPK signaling for integrins
Glucagon-like Peptide-1 (GLP1) regulates insulin secretion
Rap1 signalling
MAP2K and MAPK activation
Neutrophil degranulation
Signaling by moderate kinase activity BRAF mutants
Signaling by high-kinase activity BRAF mutants
Signaling by RAS mutants
Signaling by BRAF and RAF fusions
Paradoxical activation of RAF signaling by kinase inactive BRAF
MET activates RAP1 and RAC1


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
Show

 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
Show

 HP:0000074 Ureteropelvic junction obstruction 
Show

 HP:0000081 Duplicated collecting system 
Show

 HP:0000126 Hydronephrosis 
Show

 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
Show

 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
Show

 HP:0000238 Hydrocephalus 
Show

 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
Show

 HP:0000298 Mask-like facies 
Show

 HP:0000384 Preauricular skin tag "A rudimentary tag of ear tissue often containing a core of cartilage and located just in front of the auricle (outer part of the ear)." [HPO:curators]
Show

 HP:0000400 Large ears 
Show

 HP:0000405 Hearing loss, conductive 
Show

 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
Show

 HP:0000411 Protruding ears 
Show

 HP:0000482 Microcornea "A congenital abnormality of the `cornea` (FMA:58238) in which the cornea and the anterior segment of the eye are smaller than normal. The horizontal diameter of the cornea does not reach 10 mm even in adulthood." [HPO:probinson]
Show

 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
Show

 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
Show

 HP:0000527 Long eyelashes "Mid upper eyelash length >10 mm or increased length of the eyelashes (subjective)." [pmid:19125427]
Show

 HP:0000589 Coloboma "A developmental defect characterized by a cleft of some portion of the `eye` (FMA:54448`) or ocular adnexa." [HPO:probinson]
Show

 HP:0000592 Blue sclerae 
Show

 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
Show

 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
Show

 HP:0000687 Widely spaced teeth 
Show

 HP:0000691 Microdontia 
Show

 HP:0000776 Diaphragmatic hernia "Diaphragmatic hernia is the result of a developmental defect causing an abnormal opening in the diaphragm, through which abdominal organs (stomach, spleen, liver, and intestines) can protrude into the thoracic cavity. This usually causes respiratory distress in the newborn period." [HPO:curators]
Show

 HP:0000826 Precocious puberty "The onset of secondary sexual characteristics before a normal age. Although it is difficult to define normal age ranges because of the marked variation with which puberty begins in normal children, precocious puberty can be defined as the onset of puberty before the age of 8 years in girls or 9 years in boys." [HPO:curators]
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
Show

 HP:0001508 Failure to thrive 
Show

 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
Show

 HP:0001671 Abnormality of the cardiac septa 
Show

 HP:0001680 Coarctation of aorta "Coarctation of the aorta is a narrowing or constriction of the aorta just distal to the origin of the left subclavian artery." [HPO:curators]
Show

 HP:0002000 Columella, short "Reduced distance from the anterior border of the naris to the subnasale." [pmid:19152422]
Show

 HP:0002119 Ventriculomegaly 
Show

 HP:0002120 Cerebral cortical atrophy 
Show

 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
Show

 HP:0002553 Arched eyebrows 
Show

 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
Show

 HP:0002719 Recurrent infections 
Show

 HP:0002827 Dislocated hips 
Show

 HP:0002937 Hemivertebrae 
Show

 HP:0003316 Butterfly vertebrae 
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0004736 Ectopic kidney with fusion 
Show

 HP:0005338 Sparse lateral eyebrows 
Show

 HP:0005692 Joint hyperflexibility 
Show

 HP:0005819 Abnormally short and broad middle phalanges 
Show

 HP:0007477 Abnormal dermatoglyphics "An abnormality of dermatoglyphs (fingerprints), which are present on fingers, palms, toes, and soles." [HPO:curators]
Show

 HP:0007655 Eversion of lateral third of lower eyelids 
Show

 HP:0008678 Renal hypoplasia/aplasia 
Show

 HP:0008736 Hypoplasia of penis 
Show

 HP:0009237 Hypoplastic/small 5th finger "Hypoplastic/small 5th (little) finger." [HPO:curators]
Show

 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
Show

 HP:0100267 Lip pits 
Show

 HP:0200055 Small hands 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000050820 BCAR1 / P56945 / BCAR1, Cas family scaffolding protein  / reaction / complex
 ENSG00000035403 VCL / P18206 / vinculin  / complex
 ENSG00000103653 CSK / P41240 / C-terminal Src kinase  / reaction / complex
 ENSG00000132155 RAF1 / P04049 / Raf-1 proto-oncogene, serine/threonine kinase  / reaction / complex
 ENSG00000134313 Q9ULH0 / KIDINS220 / kinase D interacting substrate 220  / reaction / complex
 ENSG00000110799 VWF / P04275 / von Willebrand factor  / complex / reaction
 ENSG00000005961 ITGA2B / P08514 / integrin subunit alpha 2b  / complex / reaction
 ENSG00000132359 Q684P5 / RAP1GAP2 / RAP1 GTPase activating protein 2  / reaction
 ENSG00000076864 P47736 / RAP1GAP / RAP1 GTPase activating protein  / reaction
 ENSG00000167193 CRK / P46108 / CRK proto-oncogene, adaptor protein  / reaction / complex
 ENSG00000172575 O95267 / RASGRP1 / RAS guanyl releasing protein 1  / reaction
 ENSG00000171560 FGA / P02671 / fibrinogen alpha chain  / complex / reaction
 ENSG00000171564 FGB / P02675 / fibrinogen beta chain  / reaction / complex
 ENSG00000157764 BRAF / P15056 / B-Raf proto-oncogene, serine/threonine kinase  / reaction / complex
 ENSG00000115414 FN1 / P02751 / fibronectin 1  / reaction / complex
 ENSG00000169398 PTK2 / Q05397 / protein tyrosine kinase 2  / reaction / complex
 ENSG00000171557 FGG / P02679 / fibrinogen gamma chain  / reaction / complex
 ENSG00000166913 YWHAB / P31946 / tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta  / complex / reaction
 ENSG00000115904 SOS1 / Q07889 / SOS Ras/Rac guanine nucleotide exchange factor 1  / complex / reaction
 ENSG00000177885 GRB2 / P62993 / growth factor receptor bound protein 2  / reaction / complex
 ENSG00000134259 NGF / P01138 / nerve growth factor  / complex / reaction
 ENSG00000137076 TLN1 / Q9Y490 / talin 1  / complex / reaction
 ENSG00000198400 NTRK1 / P04629 / neurotrophic receptor tyrosine kinase 1  / complex / reaction
 ENSG00000077420 Q7Z5R6 / APBB1IP / amyloid beta precursor protein binding family B member 1 interacting protein  / reaction / complex
 ENSG00000068831 Q7LDG7 / RASGRP2 / RAS guanyl releasing protein 2  / reaction
 ENSG00000197122 SRC / P12931 / SRC proto-oncogene, non-receptor tyrosine kinase  / reaction / complex
 ENSG00000160691 SHC1 / P29353 / SHC adaptor protein 1  / reaction / complex
 ENSG00000107263 Q13905 / RAPGEF1 / Rap guanine nucleotide exchange factor 1  / reaction
 ENSG00000196396 PTPN1 / P18031 / protein tyrosine phosphatase, non-receptor type 1  / reaction
 ENSG00000165025 SYK / P43405 / spleen associated tyrosine kinase  / complex / reaction
 ENSG00000079337 O95398 / RAPGEF3 / Rap guanine nucleotide exchange factor 3  / reaction
 ENSG00000091428 Q8WZA2 / RAPGEF4 / Rap guanine nucleotide exchange factor 4  / reaction
 ENSG00000213445 SIPA1 / Q96FS4 / signal-induced proliferation-associated 1  / reaction
 ENSG00000259207 ITGB3 / P05106 / integrin subunit beta 3  / reaction / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr