ENSGALG00000005708


Gallus gallus

Features
Gene ID: ENSGALG00000005708
  
Biological name :HNF4beta
  
Synonyms : hepatic nuclear factor 4beta / HNF4beta
  
Possible biological names infered from orthology :
  
Species: Gallus gallus
  
Chr. number: 11
Strand: 1
Band:
Gene start: 17222803
Gene end: 17243548
  
Corresponding Affymetrix probe sets: Gga.14305.1.S1_at (Chicken Array)   Gga.6653.1.S1_at (Chicken Array)   GgaAffx.26567.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000038239
NCBI entrez gene - 415820     See in Manteia.
RefSeq - XM_015292557
RefSeq - NM_001030576
RefSeq - XM_015292555
RefSeq - XM_015292556
RefSeq Peptide - NP_001025747
swissprot - F1NRJ4
Ensembl - ENSGALG00000005708
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CABZ01057488.1ENSDARG00000104742Danio rerio


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HNF4A / hepatocyte nuclear factor 4-alpha / P41235* / P49698*ENSGALG0000000428567
HNF4G / hepatocyte nuclear factor 4 gamma / Q14541*ENSGALG0000004262165
RXRG / retinoic acid receptor RXR-gamma / P28705* / P48443* / retinoid X receptor gamma*ENSGALG0000004073029
NR2F6 / nuclear receptor subfamily 2 group F member 6 / P10588* / P43136*ENSGALG0000004301028
NR2F2 / COUP transcription factor 2 / P24468* / P43135* / nuclear receptor subfamily 2 group F member 2*ENSGALG0000000700027
NR2F1 / nuclear receptor subfamily 2 group F member 1 / P10589*ENSGALG0000002790726
NR2E1 / nuclear receptor subfamily 2 group E member 1 / Q64104* / Q9Y466*ENSGALG0000001530525
NR2C2 / nuclear receptor subfamily 2 group C member 2 / P49116* / P49117*ENSGALG0000000851925
NR2E3 / photoreceptor-specific nuclear receptor / Q9QXZ7* / Q9Y5X4* / nuclear receptor subfamily 2 group E member 3*ENSGALG0000000209324
NR2C1 / nuclear receptor subfamily 2 group C member 1 / P13056* / Q505F1*ENSGALG0000001132724
RXRA / retinoid X receptor alpha / P19793* / P28700*ENSGALG0000004205513


Protein motifs (from Interpro)
Interpro ID Name
 IPR000003  Retinoid X receptor/HNF4
 IPR000536  Nuclear hormone receptor, ligand-binding domain
 IPR001628  Zinc finger, nuclear hormone receptor-type
 IPR001723  Nuclear hormone receptor
 IPR013088  Zinc finger, NHR/GATA-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0043401 steroid hormone mediated signaling pathway IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003707 steroid hormone receptor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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