ENSGALG00000011327


Gallus gallus

Features
Gene ID: ENSGALG00000011327
  
Biological name :NR2C1
  
Synonyms : NR2C1 / nuclear receptor subfamily 2 group C member 1
  
Possible biological names infered from orthology : P13056 / Q505F1
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 45324344
Gene end: 45368430
  
Corresponding Affymetrix probe sets: Gga.145.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000047956
Ensembl peptide - ENSGALP00000018458
NCBI entrez gene - 373913     See in Manteia.
RefSeq - NM_204124
RefSeq Peptide - NP_989455
swissprot - F1NW94
swissprot - A0A1D5P5I7
Ensembl - ENSGALG00000011327
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nr2c1ENSDARG00000045527Danio rerio
 NR2C1ENSG00000120798Homo sapiens
 Nr2c1ENSMUSG00000005897Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NR2C2 / nuclear receptor subfamily 2 group C member 2 / P49116* / P49117*ENSGALG0000000851966
NR2F6 / nuclear receptor subfamily 2 group F member 6 / P10588* / P43136*ENSGALG0000004301027
NR2F1 / nuclear receptor subfamily 2 group F member 1 / P10589*ENSGALG0000002790726
NR2F2 / COUP transcription factor 2 / P24468* / P43135* / nuclear receptor subfamily 2 group F member 2*ENSGALG0000000700026
RXRG / retinoic acid receptor RXR-gamma / P28705* / P48443* / retinoid X receptor gamma*ENSGALG0000004073024
NR2E1 / nuclear receptor subfamily 2 group E member 1 / Q64104* / Q9Y466*ENSGALG0000001530523
HNF4G / hepatocyte nuclear factor 4 gamma / Q14541*ENSGALG0000004262122
NR2E3 / photoreceptor-specific nuclear receptor / Q9QXZ7* / Q9Y5X4* / nuclear receptor subfamily 2 group E member 3*ENSGALG0000000209322
HNF4A / hepatocyte nuclear factor 4-alpha / P41235* / P49698*ENSGALG0000000428520
HNF4beta / hepatic nuclear factor 4beta ENSGALG0000000570820
RXRA / retinoid X receptor alpha / P19793* / P28700*ENSGALG0000004205512


Protein motifs (from Interpro)
Interpro ID Name
 IPR000536  Nuclear hormone receptor, ligand-binding domain
 IPR001628  Zinc finger, nuclear hormone receptor-type
 IPR001723  Nuclear hormone receptor
 IPR003068  Transcription factor COUP
 IPR013088  Zinc finger, NHR/GATA-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0030522 intracellular receptor signaling pathway IEA
 biological_processGO:0043401 steroid hormone mediated signaling pathway IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0048386 positive regulation of retinoic acid receptor signaling pathway IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0016605 PML body IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001078 transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003707 steroid hormone receptor activity IEA
 molecular_functionGO:0004879 nuclear receptor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0042826 histone deacetylase binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Nuclear Receptor transcription pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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