ENSGALG00000040730


Gallus gallus

Features
Gene ID: ENSGALG00000040730
  
Biological name :RXRG
  
Synonyms : retinoic acid receptor RXR-gamma / RXRG
  
Possible biological names infered from orthology : P28705 / P48443 / retinoid X receptor gamma
  
Species: Gallus gallus
  
Chr. number: 8
Strand: 1
Band:
Gene start: 5154111
Gene end: 5168109
  
Corresponding Affymetrix probe sets: Gga.717.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000056908
NCBI entrez gene - 396231     See in Manteia.
RefSeq - XM_015290249
RefSeq - NM_205294
RefSeq - XM_015290246
RefSeq - XM_015290248
RefSeq Peptide - NP_990625
swissprot - A0A1D5PVE2
Ensembl - ENSGALG00000040730
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rxrgbENSDARG00000004697Danio rerio
 RXRGENSG00000143171Homo sapiens
 RxrgENSMUSG00000015843Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NR2F2 / COUP transcription factor 2 / P24468* / P43135* / nuclear receptor subfamily 2 group F member 2*ENSGALG0000000700033
RXRA / retinoid X receptor alpha / P19793* / P28700*ENSGALG0000004205533
NR2F1 / nuclear receptor subfamily 2 group F member 1 / P10589*ENSGALG0000002790733
NR2F6 / nuclear receptor subfamily 2 group F member 6 / P10588* / P43136*ENSGALG0000004301032
HNF4G / hepatocyte nuclear factor 4 gamma / Q14541*ENSGALG0000004262131
NR2C2 / nuclear receptor subfamily 2 group C member 2 / P49116* / P49117*ENSGALG0000000851930
HNF4A / hepatocyte nuclear factor 4-alpha / P41235* / P49698*ENSGALG0000000428530
HNF4beta / hepatic nuclear factor 4beta ENSGALG0000000570828
NR2C1 / nuclear receptor subfamily 2 group C member 1 / P13056* / Q505F1*ENSGALG0000001132727
NR2E3 / photoreceptor-specific nuclear receptor / Q9QXZ7* / Q9Y5X4* / nuclear receptor subfamily 2 group E member 3*ENSGALG0000000209327
NR2E1 / nuclear receptor subfamily 2 group E member 1 / Q64104* / Q9Y466*ENSGALG0000001530525


Protein motifs (from Interpro)
Interpro ID Name
 IPR000003  Retinoid X receptor/HNF4
 IPR000536  Nuclear hormone receptor, ligand-binding domain
 IPR001628  Zinc finger, nuclear hormone receptor-type
 IPR001723  Nuclear hormone receptor
 IPR013088  Zinc finger, NHR/GATA-type
 IPR021780  Nuclear/hormone receptor activator site AF-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0043401 steroid hormone mediated signaling pathway IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048384 retinoic acid receptor signaling pathway IEA
 biological_processGO:0051289 protein homotetramerization IEA
 biological_processGO:1901522 positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus IEA
 cellular_componentGO:0005623 cell IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005667 transcription factor complex IDA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0001158 enhancer sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003707 steroid hormone receptor activity IEA
 molecular_functionGO:0004886 9-cis retinoic acid receptor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Nuclear Receptor transcription pathway
Signaling by Retinoic Acid


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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