ENSGALG00000011298


Gallus gallus

Features
Gene ID: ENSGALG00000011298
  
Biological name :RARB
  
Synonyms : P22448 / RARB / Retinoic acid receptor beta
  
Possible biological names infered from orthology : P10826 / P22605
  
Species: Gallus gallus
  
Chr. number: 2
Strand: 1
Band:
Gene start: 37655934
Gene end: 37978166
  
Corresponding Affymetrix probe sets: Gga.2668.1.S1_a_at (Chicken Array)   Gga.2668.2.S1_at (Chicken Array)   Gga.2668.4.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000047942
Ensembl peptide - ENSGALP00000057469
Ensembl peptide - ENSGALP00000052356
Ensembl peptide - ENSGALP00000036953
NCBI entrez gene - 396266     See in Manteia.
RefSeq - XM_015281319
RefSeq - XM_015281314
RefSeq - XM_015281315
RefSeq - XM_015281316
RefSeq - XM_015281317
RefSeq - XM_015281318
RefSeq - NM_205326
RefSeq - XM_015281313
RefSeq Peptide - NP_990657
swissprot - A0A1N8XGG5
swissprot - A0A1D5PHS6
swissprot - A0A1D5P5H4
swissprot - P22448
Ensembl - ENSGALG00000011298
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RARBENSG00000077092Homo sapiens
 RarbENSMUSG00000017491Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RARA / retinoic acid receptor alpha / P10276* / P11416*ENSGALG0000003793573
THRA / Gallus gallus thyroid hormone receptor, alpha (THRA), mRNA. / P10827* / P63058* / thyroid hormone receptor, alpha*ENSGALG0000004001730
NR1H3 / nuclear receptor subfamily 1 group H member 3 / Q13133* / Q9Z0Y9* / Mus musculus nuclear receptor subfamily 1, group H, member 3 (Nr1h3), transcript variant 3, mRNA.*ENSGALG0000003805928
THRB / P68306 / Thyroid hormone receptor beta / P10828* / P37242*ENSGALG0000001129428
NR1H4 / nuclear receptor subfamily 1 group H member 4 / Q60641* / Q96RI1* / Bile acid receptor *ENSGALG0000001159424
Nr1h5*ENSGALG0000000217023


Protein motifs (from Interpro)
Interpro ID Name
 IPR000536  Nuclear hormone receptor, ligand-binding domain
 IPR001628  Zinc finger, nuclear hormone receptor-type
 IPR001723  Nuclear hormone receptor
 IPR003078  Retinoic acid receptor
 IPR013088  Zinc finger, NHR/GATA-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0001657 ureteric bud development IEA
 biological_processGO:0002068 glandular epithelial cell development IEA
 biological_processGO:0003148 outflow tract septum morphogenesis IEA
 biological_processGO:0003406 retinal pigment epithelium development IEA
 biological_processGO:0003417 growth plate cartilage development IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0008284 positive regulation of cell proliferation IEA
 biological_processGO:0008285 negative regulation of cell proliferation IEA
 biological_processGO:0021756 striatum development IEA
 biological_processGO:0022008 neurogenesis IEA
 biological_processGO:0032331 negative regulation of chondrocyte differentiation IEA
 biological_processGO:0032526 response to retinoic acid IDA
 biological_processGO:0035108 limb morphogenesis IDA
 biological_processGO:0035116 embryonic hindlimb morphogenesis IEA
 biological_processGO:0035264 multicellular organism growth IEA
 biological_processGO:0043065 positive regulation of apoptotic process IEA
 biological_processGO:0043066 negative regulation of apoptotic process IEA
 biological_processGO:0043068 positive regulation of programmed cell death IEA
 biological_processGO:0043401 steroid hormone mediated signaling pathway IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048048 embryonic eye morphogenesis IEA
 biological_processGO:0048384 retinoic acid receptor signaling pathway IEA
 biological_processGO:0048566 embryonic digestive tract development IEA
 biological_processGO:0055012 ventricular cardiac muscle cell differentiation IEA
 biological_processGO:0060041 retina development in camera-type eye IEA
 biological_processGO:0060348 bone development IEA
 biological_processGO:0061037 negative regulation of cartilage development IEA
 biological_processGO:0070660 inner ear receptor cell differentiation involved in inner ear sensory epithelium regeneration NAS
 biological_processGO:0071729 beak morphogenesis IDA
 cellular_componentGO:0005623 cell IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IDA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003707 steroid hormone receptor activity IEA
 molecular_functionGO:0003708 retinoic acid receptor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Nuclear Receptor transcription pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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