ENSG00000077092


Homo sapiens

Features
Gene ID: ENSG00000077092
  
Biological name :RARB
  
Synonyms : P10826 / RARB / retinoic acid receptor beta
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: p24.2
Gene start: 25174332
Gene end: 25597932
  
Corresponding Affymetrix probe sets: 205080_at (Human Genome U133 Plus 2.0 Array)   208412_s_at (Human Genome U133 Plus 2.0 Array)   208413_at (Human Genome U133 Plus 2.0 Array)   208530_s_at (Human Genome U133 Plus 2.0 Array)   217020_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000398840
Ensembl peptide - ENSP00000332296
Ensembl peptide - ENSP00000373282
Ensembl peptide - ENSP00000391391
NCBI entrez gene - 5915     See in Manteia.
OMIM - 180220
RefSeq - NM_001290277
RefSeq - NM_000965
RefSeq - NM_001290216
RefSeq - NM_001290217
RefSeq - NM_001290266
RefSeq - NM_001290276
RefSeq - NM_001290300
RefSeq - NM_016152
RefSeq Peptide - NP_001277206
RefSeq Peptide - NP_001277229
RefSeq Peptide - NP_057236
RefSeq Peptide - NP_001277145
RefSeq Peptide - NP_001277146
RefSeq Peptide - NP_000956
RefSeq Peptide - NP_001277195
RefSeq Peptide - NP_001277205
swissprot - D6RBI3
swissprot - Q5QHG3
swissprot - F1D8S6
swissprot - P10826
Ensembl - ENSG00000077092
  
Related genetic diseases (OMIM): 615524 - Microphthalmia, syndromic 12, 615524

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RARBENSGALG00000011298Gallus gallus
 RarbENSMUSG00000017491Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RARG / P13631 / retinoic acid receptor gammaENSG0000017281974
RARA / P10276 / retinoic acid receptor alphaENSG0000013175974
THRA / P10827 / thyroid hormone receptor, alphaENSG0000012635130
THRB / P10828 / thyroid hormone receptor betaENSG0000015109029
NR1H2 / P55055 / nuclear receptor subfamily 1 group H member 2ENSG0000013140828
NR1H3 / Q13133 / nuclear receptor subfamily 1 group H member 3ENSG0000002543427
NR1I2 / O75469 / nuclear receptor subfamily 1 group I member 2ENSG0000014485227
NR1H4 / Q96RI1 / nuclear receptor subfamily 1 group H member 4ENSG0000001250426
NR1I3 / Q14994 / nuclear receptor subfamily 1 group I member 3ENSG0000014325722
VDR / P11473 / vitamin D receptorENSG0000011142422


Protein motifs (from Interpro)
Interpro ID Name
 IPR000536  Nuclear hormone receptor, ligand-binding domain
 IPR001628  Zinc finger, nuclear hormone receptor-type
 IPR001723  Nuclear hormone receptor
 IPR003078  Retinoic acid receptor
 IPR013088  Zinc finger, NHR/GATA-type
 IPR035500  Nuclear hormone receptor-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0001657 ureteric bud development IEA
 biological_processGO:0002068 glandular epithelial cell development IEA
 biological_processGO:0003148 outflow tract septum morphogenesis IEA
 biological_processGO:0003406 retinal pigment epithelium development IEA
 biological_processGO:0003417 growth plate cartilage development IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter TAS
 biological_processGO:0007165 signal transduction TAS
 biological_processGO:0008284 positive regulation of cell proliferation IEA
 biological_processGO:0008285 negative regulation of cell proliferation IEA
 biological_processGO:0021756 striatum development IEA
 biological_processGO:0022008 neurogenesis IEA
 biological_processGO:0031641 regulation of myelination IEA
 biological_processGO:0032331 negative regulation of chondrocyte differentiation IEA
 biological_processGO:0035116 embryonic hindlimb morphogenesis IEA
 biological_processGO:0035264 multicellular organism growth IEA
 biological_processGO:0043065 positive regulation of apoptotic process IEA
 biological_processGO:0043066 negative regulation of apoptotic process IEA
 biological_processGO:0043068 positive regulation of programmed cell death IEA
 biological_processGO:0043401 steroid hormone mediated signaling pathway IEA
 biological_processGO:0045666 positive regulation of neuron differentiation IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048048 embryonic eye morphogenesis IEA
 biological_processGO:0048384 retinoic acid receptor signaling pathway IEA
 biological_processGO:0048566 embryonic digestive tract development IMP
 biological_processGO:0055012 ventricular cardiac muscle cell differentiation IEA
 biological_processGO:0060041 retina development in camera-type eye IEA
 biological_processGO:0060348 bone development IEA
 biological_processGO:0061037 negative regulation of cartilage development IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0003677 DNA binding TAS
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003707 steroid hormone receptor activity IEA
 molecular_functionGO:0003708 retinoic acid receptor activity TAS
 molecular_functionGO:0008144 drug binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0046965 retinoid X receptor binding IEA


Pathways (from Reactome)
Pathway description
Nuclear Receptor transcription pathway
Signaling by Retinoic Acid
Activation of anterior HOX genes in hindbrain development during early embryogenesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
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 HP:0000085 Horseshoe kidney 
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 HP:0000089 Renal hypoplasia 
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 HP:0000130 Abnormality of the uterus "An abnormality of the uterus (womb)." [HPO:curators]
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 HP:0000278 Retrognathia 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000455 Broad nasal tip 
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 HP:0000528 Anophthalmia "Absence of a true eyeball." [HPO:curators]
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000776 Diaphragmatic hernia "Diaphragmatic hernia is the result of a developmental defect causing an abnormal opening in the diaphragm, through which abdominal organs (stomach, spleen, liver, and intestines) can protrude into the thoracic cavity. This usually causes respiratory distress in the newborn period." [HPO:curators]
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 HP:0000813 Bicornuate uterus 
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 HP:0001249 Mental retardation 
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001734 Annular pancreas 
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 HP:0002089 Pulmonary hypoplasia 
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 HP:0005156 Hypoplastic left atrium 
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 HP:0025408 Abnormal spleen morphology "Any anomaly of the structure of the spleen." []
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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 HP:0100800 Aplasia/Hypoplasia of the pancreas "A congential underdevelopment (aplasia or hypoplasia) of the pancreas." [HPO:sdoelken]
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 HP:0100867 Duodenal stenosis "The narrowing or partial blockage of a portion of the duodenum." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000186350 RXRA / P19793 / retinoid X receptor alpha  / complex
 ENSG00000143320 CRABP2 / P29373 / cellular retinoic acid binding protein 2  / complex / reaction
 ENSG00000204231 RXRB / P28702 / retinoid X receptor beta  / complex






 

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