ENSG00000126351


Homo sapiens

Features
Gene ID: ENSG00000126351
  
Biological name :THRA
  
Synonyms : P10827 / THRA / thyroid hormone receptor, alpha
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: 1
Band: q21.1
Gene start: 40058290
Gene end: 40093867
  
Corresponding Affymetrix probe sets: 1316_at (Human Genome U133 Plus 2.0 Array)   204100_at (Human Genome U133 Plus 2.0 Array)   214883_at (Human Genome U133 Plus 2.0 Array)   217476_at (Human Genome U133 Plus 2.0 Array)   35846_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000464123
Ensembl peptide - ENSP00000395641
Ensembl peptide - ENSP00000377679
Ensembl peptide - ENSP00000264637
Ensembl peptide - ENSP00000443972
Ensembl peptide - ENSP00000464414
Ensembl peptide - ENSP00000462955
Ensembl peptide - ENSP00000463466
Ensembl peptide - ENSP00000464013
NCBI entrez gene - 7067     See in Manteia.
OMIM - 190120
RefSeq - NM_199334
RefSeq - NM_001190918
RefSeq - NM_001190919
RefSeq - NM_003250
RefSeq Peptide - NP_001177847
RefSeq Peptide - NP_955366
RefSeq Peptide - NP_003241
RefSeq Peptide - NP_001177848
swissprot - Q6FH41
swissprot - J3KTF3
swissprot - J3QR26
swissprot - J3QRA9
swissprot - J3QRW5
swissprot - P10827
Ensembl - ENSG00000126351
  
Related genetic diseases (OMIM): 614450 - Hypothyroidism, congenital, nongoitrous, 6, 614450

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 thraaENSDARG00000000151Danio rerio
 thrabENSDARG00000052654Danio rerio
 THRAENSGALG00000040017Gallus gallus
 ThraENSMUSG00000058756Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
THRB / P10828 / thyroid hormone receptor betaENSG0000015109059
RARG / P13631 / retinoic acid receptor gammaENSG0000017281928
RARB / P10826 / retinoic acid receptor betaENSG0000007709228
RARA / P10276 / retinoic acid receptor alphaENSG0000013175927
NR1H4 / Q96RI1 / nuclear receptor subfamily 1 group H member 4ENSG0000001250424
NR1H2 / P55055 / nuclear receptor subfamily 1 group H member 2ENSG0000013140823
NR1H3 / Q13133 / nuclear receptor subfamily 1 group H member 3ENSG0000002543423
NR1I2 / O75469 / nuclear receptor subfamily 1 group I member 2ENSG0000014485222
VDR / P11473 / vitamin D receptorENSG0000011142422
NR1I3 / Q14994 / nuclear receptor subfamily 1 group I member 3ENSG0000014325721


Protein motifs (from Interpro)
Interpro ID Name
 IPR000536  Nuclear hormone receptor, ligand-binding domain
 IPR001628  Zinc finger, nuclear hormone receptor-type
 IPR001723  Nuclear hormone receptor
 IPR001728  Thyroid hormone receptor
 IPR013088  Zinc finger, NHR/GATA-type
 IPR035500  Nuclear hormone receptor-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001502 cartilage condensation IEA
 biological_processGO:0001503 ossification IEA
 biological_processGO:0002155 regulation of thyroid hormone mediated signaling pathway IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IDA
 biological_processGO:0006366 transcription by RNA polymerase II IDA
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter TAS
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007611 learning or memory IEA
 biological_processGO:0008016 regulation of heart contraction IEA
 biological_processGO:0008050 female courtship behavior IEA
 biological_processGO:0009409 response to cold IEA
 biological_processGO:0009755 hormone-mediated signaling pathway IDA
 biological_processGO:0009887 animal organ morphogenesis IEA
 biological_processGO:0010831 positive regulation of myotube differentiation IEA
 biological_processGO:0017055 negative regulation of RNA polymerase II transcriptional preinitiation complex assembly IDA
 biological_processGO:0030218 erythrocyte differentiation IEA
 biological_processGO:0030522 intracellular receptor signaling pathway IEA
 biological_processGO:0030878 thyroid gland development IEA
 biological_processGO:0033032 regulation of myeloid cell apoptotic process IEA
 biological_processGO:0042994 cytoplasmic sequestering of transcription factor IEA
 biological_processGO:0043401 steroid hormone mediated signaling pathway IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IDA
 biological_processGO:0045925 positive regulation of female receptivity IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0050994 regulation of lipid catabolic process IEA
 biological_processGO:0060509 type I pneumocyte differentiation IEA
 biological_processGO:2000143 negative regulation of DNA-templated transcription, initiation IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 molecular_functionGO:0000976 transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0002153 steroid receptor RNA activator RNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003707 steroid hormone receptor activity IEA
 molecular_functionGO:0003727 single-stranded RNA binding IEA
 molecular_functionGO:0004879 nuclear receptor activity IEA
 molecular_functionGO:0004887 thyroid hormone receptor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding IPI
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0017025 TBP-class protein binding IDA
 molecular_functionGO:0019904 protein domain specific binding IPI
 molecular_functionGO:0031490 chromatin DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IDA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0070324 thyroid hormone binding IPI


Pathways (from Reactome)
Pathway description
Nuclear Receptor transcription pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000158 Macroglossia "Increased length and width of the tongue." [pmid:19125428]
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 HP:0000239 Large fontanelles "In newborns, the two frontal bones, two parietal bones, and one occipital bone are joined by fibrous sutures, which form a small posterior fontanelle, and a larger, diamond-shaped anterior fontanelle. These regions allow for the skull to pass the birth canal and for later growth. The fontanelles gradually ossify, whereby the posterior fontanelle usually closes by eight weeks and the anterior fontanelle by the 9th to 16th month of age. Large fontanelles are diagnosed if the fontanelles are larger than age-dependent norms." [HPO:curators]
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 HP:0000280 Coarse facial features 
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 HP:0000316 Hypertelorism 
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 HP:0000684 Delayed dentition "Delayed eruption of teeth." [HPO:curators]
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 HP:0000821 Hypothyroidism 
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 HP:0000851 Congenital hypothyroidism 
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 HP:0000952 Jaundice "Yellow pigmentation of the skin or sclera due to bilirubin, which in turn is the result of increased bilirubin concentration in the bloodstream." [HPO:curators]
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 HP:0000958 Dry skin 
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001374 Congenital hip dislocation 
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 HP:0001510 Growth retardation 
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0001539 Omphalocele 
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 HP:0001903 Anemia 
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 HP:0002019 Constipation 
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 HP:0002329 Drowsiness 
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 HP:0002360 Sleep disturbances "An abnormality of sleep including such phenomena as 1) insomnia/hypersomnia, 2) non-restorative sleep, 3) sleep schedule disorder, 4) excessive daytime somnolence, 5) sleep apnea, and 6) restlessness." [HPO:curators]
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0002930 Thyroid hormone receptor defect 
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 HP:0003270 Abdominal distention "Enlargement or distention of the abdomen, which can be a secondary feature associated with a number of conditions such as bowel obstruction." [HPO:curators]
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 HP:0004324 Increased body weight 
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 HP:0004482 Relative macrocephaly "A relatively mild degree of macrocephaly in which the head circumference is not above two standard deviations from the mean, but appears dysproportionately large when other factors such as body stature are taken into account." [HPO:curators]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0012559 Increased T3/T4 ratio "A ratio of serum triiodothyronine (T3) to thyroxine (T4) in the blood that is higher than normal." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000184900 SUMO3 / P55854 / small ubiquitin-like modifier 3  / reaction
 ENSG00000103275 UBE2I / P63279 / ubiquitin conjugating enzyme E2 I  / reaction
 ENSG00000116030 SUMO1 / P63165 / small ubiquitin-like modifier 1  / complex / reaction






 

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