ENSGALG00000012207


Gallus gallus

Features
Gene ID: ENSGALG00000012207
  
Biological name :CCNT2
  
Synonyms : CCNT2 / cyclin T2
  
Possible biological names infered from orthology : O60583 / Q7TQK0
  
Species: Gallus gallus
  
Chr. number: 7
Strand: 1
Band:
Gene start: 30610000
Gene end: 30632948
  
Corresponding Affymetrix probe sets: Gga.1289.1.S1_at (Chicken Array)   GgaAffx.23819.3.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000019904
NCBI entrez gene - 424289     See in Manteia.
RefSeq - XM_004942989
RefSeq - XM_422134
RefSeq - XM_015289917
RefSeq - XM_015289918
swissprot - F1NIJ9
Ensembl - ENSGALG00000012207
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ccnt2aENSDARG00000036685Danio rerio
 CCNT2ENSG00000082258Homo sapiens
 Ccnt2ENSMUSG00000026349Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CCNK / cyclin-K / O75909*ENSGALG0000001113817
CCNL2 / cyclin-L1 / Q96S94* / Q9JJA7* / cyclin L2*ENSGALG0000000155116
CCNL1 / cyclin L1 / Q52KE7* / Q9UK58* / Mus musculus cyclin L1 (Ccnl1), transcript variant 2, mRNA.*ENSGALG0000000969915
CCNC / P55168 / Cyclin-C / P24863* / Q62447*ENSGALG000000154719


Protein motifs (from Interpro)
Interpro ID Name
 IPR006671  Cyclin, N-terminal
 IPR013763  Cyclin-like
 IPR028862  Cyclin-T2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0007519 skeletal muscle tissue development IEA
 biological_processGO:0019085 early viral transcription IEA
 biological_processGO:0019086 late viral transcription IEA
 biological_processGO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity IBA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:1901409 positive regulation of phosphorylation of RNA polymerase II C-terminal domain IBA
 cellular_componentGO:0000307 cyclin-dependent protein kinase holoenzyme complex IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0008024 cyclin/CDK positive transcription elongation factor complex IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 molecular_functionGO:0001223 transcription coactivator binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IBA
 molecular_functionGO:0070063 RNA polymerase binding IEA
 molecular_functionGO:0097322 7SK snRNA binding IEA


Pathways (from Reactome)
Pathway description
Formation of RNA Pol II elongation complex
SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription
RNA Polymerase II Pre-transcription Events
TP53 Regulates Transcription of DNA Repair Genes
RNA polymerase II transcribes snRNA genes
RNA Polymerase II Transcription Elongation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000035576 CDK9 / Q5ZKN1 / Cyclin-dependent kinase 9 / P50750* / Q99J95*  / complex / reaction
 ENSGALG00000014184 SMAD2* / Q15796* / Q62432* / SMAD family member 2* / Mothers against decapentaplegic homolog 2 *  / reaction
 ENSGALG00000036001 SMAD2Z / SMAD2* / Q62432* / Q15796* / SMAD family member 2* / Mothers against decapentaplegic homolog 2 *  / reaction






 

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