ENSGALG00000026159


Gallus gallus

Features
Gene ID: ENSGALG00000026159
  
Biological name :PDLIM7
  
Synonyms : PDLIM7 / PDZ and LIM domain protein 7
  
Possible biological names infered from orthology : PDZ and LIM domain 7 / Q3TJD7 / Q9NR12
  
Species: Gallus gallus
  
Chr. number: 13
Strand: -1
Band:
Gene start: 10155464
Gene end: 10172647
  
Corresponding Affymetrix probe sets: Gga.7667.1.S1_at (Chicken Array)   GgaAffx.12403.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000042621
Ensembl peptide - ENSGALP00000043551
Ensembl peptide - ENSGALP00000063573
Ensembl peptide - ENSGALP00000059884
Ensembl peptide - ENSGALP00000059544
Ensembl peptide - ENSGALP00000058680
Ensembl peptide - ENSGALP00000052921
Ensembl peptide - ENSGALP00000049795
Ensembl peptide - ENSGALP00000044430
Ensembl peptide - ENSGALP00000044046
NCBI entrez gene - 416362     See in Manteia.
RefSeq - XM_015293820
RefSeq - XM_015293808
RefSeq - XM_015293809
RefSeq - XM_015293810
RefSeq - XM_015293811
RefSeq - XM_015293812
RefSeq - XM_015293814
RefSeq - XM_015293815
RefSeq - XM_015293816
RefSeq - XM_015293817
RefSeq - XM_015293818
RefSeq - XM_015293819
RefSeq - NM_001005345
RefSeq - XM_015293796
RefSeq - XM_015293797
RefSeq - XM_015293798
RefSeq - XM_015293799
RefSeq - XM_015293800
RefSeq - XM_015293801
RefSeq - XM_015293803
RefSeq - XM_015293804
RefSeq - XM_015293805
RefSeq - XM_015293806
RefSeq - XM_015293807
RefSeq Peptide - NP_001005345
swissprot - A0A1D5PJC9
swissprot - A0A1D5PAN2
swissprot - A0A1D5NVQ4
swissprot - A0A1D5NUM8
swissprot - A0A1D5NT98
swissprot - A0A0E4BA89
swissprot - A0A0E4B9S2
swissprot - A0A0E3VN65
swissprot - A0A1L1RM90
swissprot - R4GKC8
Ensembl - ENSGALG00000026159
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CABZ01078593.1ENSDARG00000103854Danio rerio
 PDLIM7ENSG00000196923Homo sapiens
 Pdlim7ENSMUSG00000021493Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PDLIM5 / PDZ and LIM domain protein 5 / Q8CI51* / Q96HC4* / PDZ and LIM domain 5*ENSGALG0000001221128
PXN / paxillin / P49023* / Q8VI36*ENSGALG0000000724712
LDB3ENSGALG0000000197710
LIMS2* / Q7Z4I7* / Q91XD2* / LIM zinc finger domain containing 2* / LIM and senescent cell antigen-like-containing domain protein 2 *ENSGALG000000019959
LIMS1 / LIM and senescent cell antigen-like-containing domain protein 1 / AC013271.1* / AC112229.3* / Mus musculus LIM and senescent cell antigen-like domains 1 (Lims1), transcript variant 6, mRNA.*ENSGALG000000299709
FHL1 / four and a half LIM domains 1 / Fhl4* / P97447* / Q13642* / Four and a half LIM domains protein 1 *ENSGALG000000061909
FHL3 / four and a half LIM domains 3 / Q13643* / Q9R059* / Four and a half LIM domains protein 3 *ENSGALG000000351878
FHL5 / four and a half LIM domains 5 / Q5TD97* / Q9WTX7* / Four and a half LIM domains protein 5 *ENSGALG000000155738
FHL2 / four and a half LIM domains 2 / O70433* / Q14192* / Four and a half LIM domains protein 2 *ENSGALG000000167978
ENSGALG000000442584
ENSGALG000000458154
LIMS2* / Q7Z4I7* / Q91XD2* / LIM zinc finger domain containing 2* / LIM and senescent cell antigen-like-containing domain protein 2 *ENSGALG000000439664
LIMS2* / Q7Z4I7* / Q91XD2* / LIM zinc finger domain containing 2* / LIM and senescent cell antigen-like-containing domain protein 2 *ENSGALG000000450554


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR001781  Zinc finger, LIM-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006913 nucleocytoplasmic transport IDA
 biological_processGO:0032880 regulation of protein localization IDA
 biological_processGO:0043433 negative regulation of DNA-binding transcription factor activity IDA
 cellular_componentGO:0001725 stress fiber IDA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005884 actin filament IDA
 cellular_componentGO:0015629 actin cytoskeleton IDA
 cellular_componentGO:0030864 cortical actin cytoskeleton IDA
 cellular_componentGO:0031941 filamentous actin IDA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IDA
 molecular_functionGO:0008134 transcription factor binding IPI
 molecular_functionGO:0033613 activating transcription factor binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
RET signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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