ENSG00000196923


Homo sapiens

Features
Gene ID: ENSG00000196923
  
Biological name :PDLIM7
  
Synonyms : PDLIM7 / PDZ and LIM domain 7 / Q9NR12
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: q35.3
Gene start: 177483394
Gene end: 177497606
  
Corresponding Affymetrix probe sets: 1569149_at (Human Genome U133 Plus 2.0 Array)   1569150_x_at (Human Genome U133 Plus 2.0 Array)   203369_x_at (Human Genome U133 Plus 2.0 Array)   203370_s_at (Human Genome U133 Plus 2.0 Array)   214121_x_at (Human Genome U133 Plus 2.0 Array)   214122_at (Human Genome U133 Plus 2.0 Array)   214266_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000422363
Ensembl peptide - ENSP00000424850
Ensembl peptide - ENSP00000439157
Ensembl peptide - ENSP00000431236
Ensembl peptide - ENSP00000426213
Ensembl peptide - ENSP00000347776
Ensembl peptide - ENSP00000348099
Ensembl peptide - ENSP00000352964
Ensembl peptide - ENSP00000377177
Ensembl peptide - ENSP00000377182
Ensembl peptide - ENSP00000421664
NCBI entrez gene - 9260     See in Manteia.
OMIM - 605903
RefSeq - XM_011534699
RefSeq - NM_005451
RefSeq - NM_203352
RefSeq - NM_213636
RefSeq - XM_011534698
RefSeq Peptide - NP_998801
RefSeq Peptide - NP_005442
RefSeq Peptide - NP_976227
swissprot - H0Y8W6
swissprot - H7BYK4
swissprot - D6RF83
swissprot - D6RAN1
swissprot - Q9NR12
swissprot - D6RH06
Ensembl - ENSG00000196923
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CABZ01078593.1ENSDARG00000103854Danio rerio
 PDLIM7ENSGALG00000026159Gallus gallus
 Pdlim7ENSMUSG00000021493Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LDB3 / O75112 / LIM domain binding 3ENSG0000012236749
PDLIM5 / Q96HC4 / PDZ and LIM domain 5ENSG0000016311048
PXN / P49023 / paxillinENSG0000008915924
O43294 / TGFB1I1 / transforming growth factor beta 1 induced transcript 1ENSG0000014068224
LPXN / O60711 / leupaxinENSG0000011003118
LIMS1 / P48059 / LIM zinc finger domain containing 1ENSG0000016975617
LIMS2 / Q7Z4I7 / LIM zinc finger domain containing 2ENSG0000007216316
FHL2 / Q14192 / four and a half LIM domains 2ENSG0000011564114
FHL3 / Q13643 / four and a half LIM domains 3ENSG0000018338614
FHL5 / Q5TD97 / four and a half LIM domains 5ENSG0000011221413
FHL1 / Q13642 / four and a half LIM domains 1ENSG0000002226712
AC013271.1ENSG000002843377
AC112229.3ENSG000002572077
LIMS3 / P0CW19 / LIM zinc finger domain containing 3ENSG000002569772
LIMS4 / P0CW20 / LIM zinc finger domain containing 4ENSG000002566712


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR001781  Zinc finger, LIM-type
 IPR036034  PDZ superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001503 ossification IEA
 biological_processGO:0006898 receptor-mediated endocytosis TAS
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007411 axon guidance TAS
 biological_processGO:0030036 actin cytoskeleton organization IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0045669 positive regulation of osteoblast differentiation IEA
 cellular_componentGO:0001725 stress fiber IEA
 cellular_componentGO:0001726 ruffle IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005913 cell-cell adherens junction IDA
 cellular_componentGO:0005925 focal adhesion IDA
 cellular_componentGO:0015629 actin cytoskeleton IDA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
RET signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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