ENSG00000072163


Homo sapiens

Features
Gene ID: ENSG00000072163
  
Biological name :LIMS2
  
Synonyms : LIMS2 / LIM zinc finger domain containing 2 / Q7Z4I7
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: q14.3
Gene start: 127638381
Gene end: 127681786
  
Corresponding Affymetrix probe sets: 220765_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000397253
Ensembl peptide - ENSP00000388611
Ensembl peptide - ENSP00000443794
Ensembl peptide - ENSP00000326888
Ensembl peptide - ENSP00000347240
Ensembl peptide - ENSP00000386252
Ensembl peptide - ENSP00000386345
Ensembl peptide - ENSP00000386383
Ensembl peptide - ENSP00000386570
Ensembl peptide - ENSP00000386637
Ensembl peptide - ENSP00000386907
Ensembl peptide - ENSP00000387002
NCBI entrez gene - 55679     See in Manteia.
OMIM - 607908
RefSeq - XM_017004469
RefSeq - NM_001136037
RefSeq - NM_001161403
RefSeq - NM_001161404
RefSeq - NM_001256542
RefSeq - NM_017980
RefSeq - XM_005263710
RefSeq - XM_006712627
RefSeq - XM_011511453
RefSeq Peptide - NP_001129509
RefSeq Peptide - NP_001154876
RefSeq Peptide - NP_001243471
RefSeq Peptide - NP_060450
RefSeq Peptide - NP_001154875
swissprot - F8WEF3
swissprot - H0Y592
swissprot - A0A024RAH1
swissprot - Q7Z4I7
Ensembl - ENSG00000072163
  
Related genetic diseases (OMIM): 616827 - Muscular dystrophy, limb-girdle, type 2W, 616827
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000043966Gallus gallus
 ENSGALG00000045055Gallus gallus
 ENSGALG00000001995Gallus gallus
 Lims2ENSMUSG00000024395Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LIMS1 / P48059 / LIM zinc finger domain containing 1ENSG0000016975678
AC112229.3ENSG0000025720740
AC013271.1ENSG0000028433740
PDLIM5 / Q96HC4 / PDZ and LIM domain 5ENSG0000016311022
PXN / P49023 / paxillinENSG0000008915921
PDLIM7 / Q9NR12 / PDZ and LIM domain 7ENSG0000019692320
FHL3 / Q13643 / four and a half LIM domains 3ENSG0000018338619
FHL2 / Q14192 / four and a half LIM domains 2ENSG0000011564119
LDB3 / O75112 / LIM domain binding 3ENSG0000012236719
O43294 / TGFB1I1 / transforming growth factor beta 1 induced transcript 1ENSG0000014068219
FHL1 / Q13642 / four and a half LIM domains 1ENSG0000002226718
FHL5 / Q5TD97 / four and a half LIM domains 5ENSG0000011221418
LPXN / O60711 / leupaxinENSG0000011003116
LIMS3 / P0CW19 / LIM zinc finger domain containing 3ENSG0000025697713
LIMS4 / P0CW20 / LIM zinc finger domain containing 4ENSG0000025667113


Protein motifs (from Interpro)
Interpro ID Name
 IPR001781  Zinc finger, LIM-type
 IPR017351  LIM and senescent cell antigen-like-containing domain protein 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0034329 cell junction assembly TAS
 biological_processGO:0043066 negative regulation of apoptotic process IEA
 biological_processGO:0045216 cell-cell junction organization IEA
 biological_processGO:0050680 negative regulation of epithelial cell proliferation IEA
 biological_processGO:0098609 cell-cell adhesion IEA
 biological_processGO:2000178 negative regulation of neural precursor cell proliferation IEA
 biological_processGO:2000346 negative regulation of hepatocyte proliferation IEA
 biological_processGO:2001046 positive regulation of integrin-mediated signaling pathway IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005925 focal adhesion IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Cell-extracellular matrix interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0001644 Dilated cardiomyopathy 
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0002273 Tetraparesis 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003560 Muscular dystrophy "The term dystrophy means abnormal growth. However, muscular dystrophy is used to describe primary myopathies with a genetic basis and a progressive course characterized by progressive skeletal muscle weakness, defects in muscle proteins, and the apoptosis of muscle cells." [HPO:curators]
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 HP:0003676 Progressive disorder 
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 HP:0006673 Reduced systolic function 
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 HP:0008981 Muscular hypertrophy, esp calf muscles "Muscle hypertrophy primarily affecting the calf muscles." [HPO:curators]
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 HP:0009025 Increased connective tissue "The presence of an abnormally increased amount of connective tissue." [HPO:curators]
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 HP:0011463 Childhood onset "Onset of disease at the age of between 1 and 5 years." [DDD:hfirth]
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 HP:0030284 Triangular tongue "A form of macrogloassia (increased size of the tongue) characterized by a broad based root of the tongue but a small tongue tip, giving the appearance of a triangle." [UToronto:bgallinger]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000166333 ILK / Q13418 / integrin linked kinase  / complex






 

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