ENSG00000122367


Homo sapiens

Features
Gene ID: ENSG00000122367
  
Biological name :LDB3
  
Synonyms : LDB3 / LIM domain binding 3 / O75112
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: 1
Band: q23.2
Gene start: 86668449
Gene end: 86736068
  
Corresponding Affymetrix probe sets: 213371_at (Human Genome U133 Plus 2.0 Array)   213717_at (Human Genome U133 Plus 2.0 Array)   216887_s_at (Human Genome U133 Plus 2.0 Array)   216888_at (Human Genome U133 Plus 2.0 Array)   234130_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000401437
Ensembl peptide - ENSP00000361136
Ensembl peptide - ENSP00000438866
Ensembl peptide - ENSP00000485538
Ensembl peptide - ENSP00000485500
Ensembl peptide - ENSP00000485389
Ensembl peptide - ENSP00000263066
Ensembl peptide - ENSP00000355296
Ensembl peptide - ENSP00000361126
NCBI entrez gene - 11155     See in Manteia.
OMIM - 605906
RefSeq - XM_017015609
RefSeq - XM_011539186
RefSeq - XM_011539187
RefSeq - XM_011539188
RefSeq - XM_011539189
RefSeq - XM_011539190
RefSeq - XM_011539191
RefSeq - XM_011539193
RefSeq - XM_011539194
RefSeq - XM_011539195
RefSeq - XM_017015606
RefSeq - XM_017015608
RefSeq - NM_001080114
RefSeq - NM_001080115
RefSeq - NM_001080116
RefSeq - NM_001171610
RefSeq - NM_001171611
RefSeq - NM_007078
RefSeq - XM_005269464
RefSeq - XM_005269466
RefSeq - XM_005269468
RefSeq - XM_011539184
RefSeq - XM_011539185
RefSeq Peptide - NP_001073584
RefSeq Peptide - NP_001073585
RefSeq Peptide - NP_001165081
RefSeq Peptide - NP_001165082
RefSeq Peptide - NP_009009
RefSeq Peptide - NP_001073583
swissprot - A0A0S2Z501
swissprot - A0A0C4DGG7
swissprot - A0A0S2Z530
swissprot - O75112
swissprot - A0A096LPD7
Ensembl - ENSG00000122367
  
Related genetic diseases (OMIM): 601493 - Cardiomyopathy, dilated, 1C, with or without LVNC, 601493
  609452 - Myopathy, myofibrillar, 4, 609452
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ldb3aENSDARG00000056322Danio rerio
 Ldb3ENSMUSG00000021798Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PDLIM5 / Q96HC4 / PDZ and LIM domain 5ENSG0000016311032
PDLIM7 / Q9NR12 / PDZ and LIM domain 7ENSG0000019692330
PXN / P49023 / paxillinENSG0000008915916
O43294 / TGFB1I1 / transforming growth factor beta 1 induced transcript 1ENSG0000014068215
LPXN / O60711 / leupaxinENSG0000011003112
LIMS1 / P48059 / LIM zinc finger domain containing 1ENSG0000016975611
FHL2 / Q14192 / four and a half LIM domains 2ENSG0000011564110
FHL3 / Q13643 / four and a half LIM domains 3ENSG0000018338610
LIMS2 / Q7Z4I7 / LIM zinc finger domain containing 2ENSG0000007216310
FHL5 / Q5TD97 / four and a half LIM domains 5ENSG000001122149
FHL1 / Q13642 / four and a half LIM domains 1ENSG000000222678
AC112229.3ENSG000002572075
AC013271.1ENSG000002843375
LIMS3 / P0CW19 / LIM zinc finger domain containing 3ENSG000002569772
LIMS4 / P0CW20 / LIM zinc finger domain containing 4ENSG000002566712


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR001781  Zinc finger, LIM-type
 IPR006643  Zasp-like motif
 IPR031847  Domain of unknown function DUF4749
 IPR036034  PDZ superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0045214 sarcomere organization IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0030018 Z disc IDA
 cellular_componentGO:0031143 pseudopodium IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 molecular_functionGO:0005080 protein kinase C binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008092 cytoskeletal protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051371 muscle alpha-actinin binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
Show

 HP:0000982 Palmoplantar keratoderma 
Show

 HP:0001271 Polyneuropathy "A generalized disorder of peripheral nerves." [HPO:curators]
Show

 HP:0001638 Cardiomyopathy 
Show

 HP:0001644 Dilated cardiomyopathy 
Show

 HP:0001874 Abnormality of neutrophil 
Show

 HP:0002600 Hyporeflexia of lower limbs 
Show

 HP:0003198 Myopathy 
Show

 HP:0003236 Elevated serum creatine phosphokinase 
Show

 HP:0003323 Muscle weakness, progressive 
Show

 HP:0003445 EMG shows neuropathic changes 
Show

 HP:0003457 Abnormal EMG findings "Abnormal results of investigations using electromyography (EMG)." [HPO:curators]
Show

 HP:0003458 EMG myopathic abnormalities "The presence of abnormal electromyographic patterns indicative of myopathy, such as small-short polyphasic motor unit potentials." [HPO:curators]
Show

 HP:0003555 Muscle fiber splitting "Fiber splitting or branching is a common finding in human and rat skeletal muscle pathology. Fiber splitting refers to longitudinal halving of the complete fiber, while branching originates from a regenerating end of a necrotic fiber as invaginations of the sarcolemma. In fiber branching, one end of the fiber remains intact as a single entity, while the other end has several branches." [pmid:6123177]
Show

 HP:0003584 Late onset 
Show

 HP:0003715 Muscle biopsy shows myofibrillar myopathy 
Show

 HP:0003736 Autophagic vacuoles 
Show

 HP:0009063 Muscle weakness, distal, progressive "Progressively reduced strength of the distal musculature." [HPO:curators]
Show

 HP:0009073 Muscle weakness, progressive, proximal "Lack of strength of the proximal muscles that becomes progressively more severe." [HPO:curators]
Show

 HP:0100578 Lipoatrophy "Localized loss of fat tissue." [HPO:sdoelken]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr