Manteia

ENSDARG00000056322

Danio rerio

Features

Gene ID:	ENSDARG00000056322

Biological name :	ldb3a

Synonyms :	ldb3a / LIM domain binding 3a

Possible biological names infered from orthology :	LDB3 / LIM domain binding 3 / LIM domain-binding protein 3 / O75112 / Q9JKS4

Species:	Danio rerio

Chr. number:	13
Strand:	1
Band:
Gene start:	22476742
Gene end:	22552687

Corresponding Affymetrix probe sets:	Dr.21057.1.S1_at (Zebrafish Array)

Cross references:	Ensembl peptide - ENSDARP00000122379 Ensembl peptide - ENSDARP00000157437 Ensembl peptide - ENSDARP00000150455 Ensembl peptide - ENSDARP00000143524 Ensembl peptide - ENSDARP00000044718 Ensembl peptide - ENSDARP00000073181 Ensembl peptide - ENSDARP00000073182 Ensembl peptide - ENSDARP00000073201 Ensembl peptide - ENSDARP00000073208 Ensembl peptide - ENSDARP00000073218 Ensembl peptide - ENSDARP00000073220 Ensembl peptide - ENSDARP00000105278 Ensembl peptide - ENSDARP00000109131 Ensembl peptide - ENSDARP00000110561 Ensembl peptide - ENSDARP00000112724 Ensembl peptide - ENSDARP00000113888 Ensembl peptide - ENSDARP00000114505 Ensembl peptide - ENSDARP00000115285 Ensembl peptide - ENSDARP00000116588 Ensembl peptide - ENSDARP00000119395 NCBI entrez gene - 794339 See in Manteia. RefSeq - NM_201505 RefSeq Peptide - NP_958913 swissprot - E7F8D5 swissprot - F1Q8D1 swissprot - F1QGX8 swissprot - F1QT83 swissprot - F1QU51 swissprot - F1QW69 swissprot - F1R1G8 swissprot - F1R4H2 swissprot - F1RCZ3 swissprot - Q4ZGK8 swissprot - Q4ZGK9 swissprot - Q4ZGL0 swissprot - Q4ZGL2 swissprot - Q4ZGL5 swissprot - E9QF27 swissprot - E9QCI0 ZFIN ID - ZDB-GENE-040121-6 Ensembl - ENSDARG00000056322

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name	ID	Species
LDB3	ENSG00000122367	Homo sapiens
Ldb3	ENSMUSG00000021798	Mus musculus

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
pdlim5b / PDZ and LIM domain 5b / PDLIM5* / Q96HC4* / PDZ and LIM domain 5*	ENSDARG00000027600	37
pdlim5a / PDZ and LIM domain 5a / PDLIM5* / Q8CI51* / Q96HC4* / PDZ and LIM domain 5* / PDZ and LIM domain protein 5 *	ENSDARG00000101777	35
CABZ01078593.1 / Q3TJD7* / PDLIM7* / Q9NR12* / PDZ and LIM domain 7* / PDZ and LIM domain protein 7 *	ENSDARG00000103854	32
ldb3b / LIM domain binding 3b	ENSDARG00000099974	19
pxna / paxillin a / PXN* / P49023* / Q8VI36* / paxillin*	ENSDARG00000088590	16
pxnb / paxillin b / PXN* / P49023* / paxillin*	ENSDARG00000060766	16
lpxn / leupaxin / O60711* / Q99N69*	ENSDARG00000079315	13
lims1 / LIM and senescent cell antigen-like domains 1 / LIMS3* / LIMS4* / P48059* / P0CW19* / P0CW20* / AC013271.1* / AC112229.3* / LIM zinc finger domain containing 4* / LIM zinc finger do...	ENSDARG00000026985	11
fhl1b / four and a half LIM domains 1b / FHL1* / Fhl4* / Q13642* / P97447* / four and a half LIM domains 1* / Four and a half LIM domains protein 1 *	ENSDARG00000056653	11
fhl3a / four and a half LIM domains 3a / FHL3* / Q13643* / Q9R059* / four and a half LIM domains 3* / Four and a half LIM domains protein 3 *	ENSDARG00000034643	11
fhl2b / four and a half LIM domains 2b / FHL2* / O70433* / Q14192* / four and a half LIM domains 2* / Four and a half LIM domains protein 2 *	ENSDARG00000003991	11
fhl5 / four and a half LIM domains 5 / Q5TD97* / Q9WTX7* / Four and a half LIM domains protein 5 *	ENSDARG00000014805	11
fhl2a / four and a half LIM domains 2a / FHL2* / O70433* / Q14192* / four and a half LIM domains 2* / Four and a half LIM domains protein 2 *	ENSDARG00000042018	11
fhl3b / four and a half LIM domains 3b / FHL3* / Q13643* / Q9R059* / four and a half LIM domains 3* / Four and a half LIM domains protein 3 *	ENSDARG00000104315	11
fhl1a / four and a half LIM domains 1a / FHL1* / Fhl4* / Q13642* / P97447* / four and a half LIM domains 1* / Four and a half LIM domains protein 1 *	ENSDARG00000071498	11
lims2 / LIM and senescent cell antigen-like domains 2 / LIMS3* / LIMS4* / LIMS1* / P48059* / P0CW19* / P0CW20* / AC013271.1* / AC112229.3* / LIM zinc finger domain containing 3* / LIM zinc ...	ENSDARG00000014976	10

Protein motifs (from Interpro)

Interpro ID	Name
IPR001478	PDZ domain
IPR001781	Zinc finger, LIM-type
IPR006643	Zasp-like motif
IPR031847	Domain of unknown function DUF4749

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0001756	somitogenesis	IMP
biological_process	GO:0007507	heart development	IMP
biological_process	GO:0007519	skeletal muscle tissue development	IMP
biological_process	GO:0007626	locomotory behavior	IMP
molecular_function	GO:0046872	metal ion binding	IEA

Pathways (from Reactome)

Pathway description

No match

Phenotype (from MGI, Zfin or HPO)

ID	Phenotype	Definition	Genetic BG
ZFA:0000054	pericardium	pericardium edematous , abnormal	Show
ZFA:0000135	notochord	notochord posterior region malformed , abnormal	Show
ZFA:0000155	somite	somite condensed , abnormal somite deformed , abnormal somite shape , abnormal	Show
ZFA:0000471	atrium	atrium decreased thickness , abnormal atrium elongated , abnormal	Show
ZFA:0001056	myotome	myotome condensed , abnormal myotome deformed , abnormal	Show
ZFA:0001094	whole organism	whole organism anterior-posterior axis decreased length , abnormal whole organism decreased mobility , abnormal	Show
ZFA:0001115	trunk	trunk curved , abnormal	Show
ZFA:0001718	presumptive atrium heart tube	presumptive atrium heart tube elongated , abnormal	Show
ZFA:0005061	ventricular myocardium	ventricular myocardium decreased size , abnormal ventricular myocardium disorganized , abnormal	Show
ZFA:0005277	skeletal muscle	skeletal muscle structure, cavities , abnormal skeletal muscle refractivity , abnormal	Show

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr