ENSDARG00000014976


Danio rerio

Features
Gene ID: ENSDARG00000014976
  
Biological name :lims2
  
Synonyms : LIM and senescent cell antigen-like domains 2 / lims2
  
Possible biological names infered from orthology : AC013271.1 / AC112229.3 / LIMS1 / LIMS3 / LIMS4 / LIM zinc finger domain containing 1 / LIM zinc finger domain containing 3 / LIM zinc finger domain containing 4 / Mus musculus LIM and senescent cell antigen-like domains 1 (Lims1), transcript variant 6, mRNA. / P0CW19 / P0CW20 / P48059
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 94884
Gene end: 100579
  
Corresponding Affymetrix probe sets: Dr.10610.1.A1_at (Zebrafish Array)   NM_001020670_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000118772
Ensembl peptide - ENSDARP00000022426
NCBI entrez gene - 553696     See in Manteia.
RefSeq - NM_001020670
RefSeq Peptide - NP_001018506
swissprot - F1R9E2
swissprot - F1QKL9
ZFIN ID - ZDB-GENE-050522-56
Ensembl - ENSDARG00000014976
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000045815Gallus gallus
 ENSGALG00000044258Gallus gallus
 LIMS1ENSGALG00000029970Gallus gallus
 AC013271.1ENSG00000284337Homo sapiens
 AC112229.3ENSG00000257207Homo sapiens
 LIMS1ENSG00000169756Homo sapiens
 LIMS3ENSG00000256977Homo sapiens
 LIMS4ENSG00000256671Homo sapiens
 Lims1ENSMUSG00000019920Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lims1 / LIM and senescent cell antigen-like domains 1 / LIMS3* / LIMS4* / P48059* / P0CW19* / P0CW20* / AC013271.1* / AC112229.3* / LIM zinc finger domain containing 4* / LIM zinc finger do...ENSDARG0000002698570
pdlim5b / PDZ and LIM domain 5b / PDLIM5* / Q96HC4* / PDZ and LIM domain 5*ENSDARG0000002760019
fhl1a / four and a half LIM domains 1a / FHL1* / Fhl4* / Q13642* / P97447* / four and a half LIM domains 1* / Four and a half LIM domains protein 1 *ENSDARG0000007149819
fhl1b / four and a half LIM domains 1b / FHL1* / Fhl4* / Q13642* / P97447* / four and a half LIM domains 1* / Four and a half LIM domains protein 1 *ENSDARG0000005665319
fhl5 / four and a half LIM domains 5 / Q5TD97* / Q9WTX7* / Four and a half LIM domains protein 5 *ENSDARG0000001480518
fhl2a / four and a half LIM domains 2a / FHL2* / O70433* / Q14192* / four and a half LIM domains 2* / Four and a half LIM domains protein 2 *ENSDARG0000004201818
fhl3a / four and a half LIM domains 3a / FHL3* / Q13643* / Q9R059* / four and a half LIM domains 3* / Four and a half LIM domains protein 3 *ENSDARG0000003464318
fhl3b / four and a half LIM domains 3b / FHL3* / Q13643* / Q9R059* / four and a half LIM domains 3* / Four and a half LIM domains protein 3 *ENSDARG0000010431518
pdlim5a / PDZ and LIM domain 5a / PDLIM5* / Q8CI51* / Q96HC4* / PDZ and LIM domain 5* / PDZ and LIM domain protein 5 *ENSDARG0000010177718
pxna / paxillin a / PXN* / P49023* / Q8VI36* / paxillin*ENSDARG0000008859017
fhl2b / four and a half LIM domains 2b / FHL2* / O70433* / Q14192* / four and a half LIM domains 2* / Four and a half LIM domains protein 2 *ENSDARG0000000399117
lpxn / leupaxin / O60711* / Q99N69*ENSDARG0000007931517
pxnb / paxillin b / PXN* / P49023* / paxillin*ENSDARG0000006076617
ldb3a / LIM domain binding 3a / LDB3* / O75112* / Q9JKS4* / LIM domain binding 3* / LIM domain-binding protein 3 *ENSDARG0000005632216
CABZ01078593.1 / Q3TJD7* / PDLIM7* / Q9NR12* / PDZ and LIM domain 7* / PDZ and LIM domain protein 7 *ENSDARG0000010385415
ldb3b / LIM domain binding 3bENSDARG000000999743


Protein motifs (from Interpro)
Interpro ID Name
 IPR001781  Zinc finger, LIM-type
 IPR017351  LIM and senescent cell antigen-like-containing domain protein 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0051896 regulation of protein kinase B signaling IMP
 biological_processGO:0060047 heart contraction IMP
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Regulation of cytoskeletal remodeling and cell spreading by IPP complex components


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000009 cardiac ventricle cardiac ventricle decreased functionality , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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