ENSGALG00000029970


Gallus gallus

Features
Gene ID: ENSGALG00000029970
  
Biological name :LIMS1
  
Synonyms : LIM and senescent cell antigen-like-containing domain protein 1 / LIMS1
  
Possible biological names infered from orthology : AC013271.1 / AC112229.3 / Mus musculus LIM and senescent cell antigen-like domains 1 (Lims1), transcript variant 6, mRNA.
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 136303011
Gene end: 136396864
  
Corresponding Affymetrix probe sets: Gga.1187.2.S1_s_at (Chicken Array)   Gga.15049.1.S1_s_at (Chicken Array)   GgaAffx.11956.1.S1_at (Chicken Array)   GgaAffx.21814.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000044096
Ensembl peptide - ENSGALP00000059137
Ensembl peptide - ENSGALP00000052585
Ensembl peptide - ENSGALP00000045907
NCBI entrez gene - 414880     See in Manteia.
RefSeq - XM_015277835
RefSeq - XM_015277838
RefSeq - XM_015277837
RefSeq - NM_001001766
RefSeq - XM_015277836
RefSeq Peptide - NP_001001766
swissprot - A0A1D5PIF2
swissprot - A0A1D5NUS8
swissprot - A0A1D5NZT8
Ensembl - ENSGALG00000029970
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lims1ENSDARG00000026985Danio rerio
 lims2ENSDARG00000014976Danio rerio
 AC013271.1ENSG00000284337Homo sapiens
 AC112229.3ENSG00000257207Homo sapiens
 Lims1ENSMUSG00000019920Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LIMS2* / Q7Z4I7* / Q91XD2* / LIM zinc finger domain containing 2* / LIM and senescent cell antigen-like-containing domain protein 2 *ENSGALG0000000199584
LIMS2* / Q7Z4I7* / Q91XD2* / LIM zinc finger domain containing 2* / LIM and senescent cell antigen-like-containing domain protein 2 *ENSGALG0000004396628
ENSGALG0000004425827
LIMS2* / Q7Z4I7* / Q91XD2* / LIM zinc finger domain containing 2* / LIM and senescent cell antigen-like-containing domain protein 2 *ENSGALG0000004505526
ENSGALG0000004581525
PDLIM5 / PDZ and LIM domain protein 5 / Q8CI51* / Q96HC4* / PDZ and LIM domain 5*ENSGALG0000001221123
FHL1 / four and a half LIM domains 1 / Fhl4* / P97447* / Q13642* / Four and a half LIM domains protein 1 *ENSGALG0000000619021
PDLIM7 / PDZ and LIM domain protein 7 / Q3TJD7* / Q9NR12* / PDZ and LIM domain 7*ENSGALG0000002615921
FHL5 / four and a half LIM domains 5 / Q5TD97* / Q9WTX7* / Four and a half LIM domains protein 5 *ENSGALG0000001557320
FHL3 / four and a half LIM domains 3 / Q13643* / Q9R059* / Four and a half LIM domains protein 3 *ENSGALG0000003518720
FHL2 / four and a half LIM domains 2 / O70433* / Q14192* / Four and a half LIM domains protein 2 *ENSGALG0000001679720
PXN / paxillin / P49023* / Q8VI36*ENSGALG0000000724720
LDB3ENSGALG000000019774


Protein motifs (from Interpro)
Interpro ID Name
 IPR001781  Zinc finger, LIM-type
 IPR017351  LIM and senescent cell antigen-like-containing domain protein 1
 IPR017896  4Fe-4S ferredoxin-type, iron-sulphur binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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