ENSGALG00000012211


Gallus gallus

Features
Gene ID: ENSGALG00000012211
  
Biological name :PDLIM5
  
Synonyms : PDLIM5 / PDZ and LIM domain protein 5
  
Possible biological names infered from orthology : PDZ and LIM domain 5 / Q8CI51 / Q96HC4
  
Species: Gallus gallus
  
Chr. number: 4
Strand: 1
Band:
Gene start: 58569546
Gene end: 58695921
  
Corresponding Affymetrix probe sets: GgaAffx.20334.1.S1_at (Chicken Array)   GgaAffx.23826.1.S1_s_at (Chicken Array)   GgaAffx.23826.6.S1_s_at (Chicken Array)   GgaAffx.23826.7.S1_at (Chicken Array)   GgaAffx.23826.7.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000049172
Ensembl peptide - ENSGALP00000036868
NCBI entrez gene - 422699     See in Manteia.
RefSeq - XM_015276314
RefSeq - XM_015276311
RefSeq - XM_015276312
RefSeq - XM_015276313
RefSeq - NM_001031149
RefSeq - XM_015276294
RefSeq - XM_015276295
RefSeq - XM_015276296
RefSeq - XM_015276297
RefSeq - XM_015276298
RefSeq - XM_015276299
RefSeq - XM_015276300
RefSeq - XM_015276301
RefSeq - XM_015276302
RefSeq - XM_015276304
RefSeq - XM_015276307
RefSeq - XM_015276308
RefSeq - XM_015276309
RefSeq Peptide - NP_001026320
swissprot - F1NTC8
swissprot - A0A1D5P8X3
Ensembl - ENSGALG00000012211
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pdlim5aENSDARG00000101777Danio rerio
 pdlim5bENSDARG00000027600Danio rerio
 PDLIM5ENSG00000163110Homo sapiens
 Pdlim5ENSMUSG00000028273Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PDLIM7 / PDZ and LIM domain protein 7 / Q3TJD7* / Q9NR12* / PDZ and LIM domain 7*ENSGALG0000002615938
PXN / paxillin / P49023* / Q8VI36*ENSGALG0000000724717
LDB3ENSGALG0000000197716
LIMS2* / Q7Z4I7* / Q91XD2* / LIM zinc finger domain containing 2* / LIM and senescent cell antigen-like-containing domain protein 2 *ENSGALG0000000199514
LIMS1 / LIM and senescent cell antigen-like-containing domain protein 1 / AC013271.1* / AC112229.3* / Mus musculus LIM and senescent cell antigen-like domains 1 (Lims1), transcript variant 6, mRNA.*ENSGALG0000002997013
FHL1 / four and a half LIM domains 1 / Fhl4* / P97447* / Q13642* / Four and a half LIM domains protein 1 *ENSGALG0000000619012
FHL2 / four and a half LIM domains 2 / O70433* / Q14192* / Four and a half LIM domains protein 2 *ENSGALG0000001679712
FHL5 / four and a half LIM domains 5 / Q5TD97* / Q9WTX7* / Four and a half LIM domains protein 5 *ENSGALG0000001557312
FHL3 / four and a half LIM domains 3 / Q13643* / Q9R059* / Four and a half LIM domains protein 3 *ENSGALG0000003518711
ENSGALG000000442586
LIMS2* / Q7Z4I7* / Q91XD2* / LIM zinc finger domain containing 2* / LIM and senescent cell antigen-like-containing domain protein 2 *ENSGALG000000439666
ENSGALG000000458156
LIMS2* / Q7Z4I7* / Q91XD2* / LIM zinc finger domain containing 2* / LIM and senescent cell antigen-like-containing domain protein 2 *ENSGALG000000450556


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR001781  Zinc finger, LIM-type
 IPR031847  Domain of unknown function DUF4749


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0098609 cell-cell adhesion IEA
 cellular_componentGO:0005913 cell-cell adherens junction IEA
 cellular_componentGO:0015629 actin cytoskeleton IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0098641 cadherin binding involved in cell-cell adhesion IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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