ENSDARG00000027600


Danio rerio

Features
Gene ID: ENSDARG00000027600
  
Biological name :pdlim5b
  
Synonyms : pdlim5b / PDZ and LIM domain 5b
  
Possible biological names infered from orthology : PDLIM5 / PDZ and LIM domain 5 / PDZ and LIM domain protein 5 / Q8CI51 / Q96HC4
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 1187653
Gene end: 1276046
  
Corresponding Affymetrix probe sets: Dr.745.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000139485
Ensembl peptide - ENSDARP00000035494
Ensembl peptide - ENSDARP00000137887
swissprot - F1QSU4
swissprot - A0A0R4IS44
swissprot - A0A0R4ISJ4
swissprot - F1QGC3
ZFIN ID - ZDB-GENE-040426-908
Ensembl - ENSDARG00000027600
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PDLIM5ENSGALG00000012211Gallus gallus
 PDLIM5ENSG00000163110Homo sapiens
 Pdlim5ENSMUSG00000028273Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pdlim5a / PDZ and LIM domain 5a / PDLIM5* / Q8CI51* / Q96HC4* / PDZ and LIM domain 5* / PDZ and LIM domain protein 5 *ENSDARG0000010177755
ldb3a / LIM domain binding 3a / LDB3* / O75112* / Q9JKS4* / LIM domain binding 3* / LIM domain-binding protein 3 *ENSDARG0000005632235
CABZ01078593.1 / Q3TJD7* / PDLIM7* / Q9NR12* / PDZ and LIM domain 7* / PDZ and LIM domain protein 7 *ENSDARG0000010385430
ldb3b / LIM domain binding 3bENSDARG0000009997416
pxnb / paxillin b / PXN* / P49023* / paxillin*ENSDARG0000006076615
pxna / paxillin a / PXN* / P49023* / Q8VI36* / paxillin*ENSDARG0000008859014
lims2 / LIM and senescent cell antigen-like domains 2 / LIMS3* / LIMS4* / LIMS1* / P48059* / P0CW19* / P0CW20* / AC013271.1* / AC112229.3* / LIM zinc finger domain containing 3* / LIM zinc ...ENSDARG0000001497612
fhl2b / four and a half LIM domains 2b / FHL2* / O70433* / Q14192* / four and a half LIM domains 2* / Four and a half LIM domains protein 2 *ENSDARG0000000399112
lpxn / leupaxin / O60711* / Q99N69*ENSDARG0000007931512
lims1 / LIM and senescent cell antigen-like domains 1 / LIMS3* / LIMS4* / P48059* / P0CW19* / P0CW20* / AC013271.1* / AC112229.3* / LIM zinc finger domain containing 4* / LIM zinc finger do...ENSDARG0000002698511
fhl1b / four and a half LIM domains 1b / FHL1* / Fhl4* / Q13642* / P97447* / four and a half LIM domains 1* / Four and a half LIM domains protein 1 *ENSDARG0000005665311
fhl3a / four and a half LIM domains 3a / FHL3* / Q13643* / Q9R059* / four and a half LIM domains 3* / Four and a half LIM domains protein 3 *ENSDARG0000003464311
fhl2a / four and a half LIM domains 2a / FHL2* / O70433* / Q14192* / four and a half LIM domains 2* / Four and a half LIM domains protein 2 *ENSDARG0000004201811
fhl3b / four and a half LIM domains 3b / FHL3* / Q13643* / Q9R059* / four and a half LIM domains 3* / Four and a half LIM domains protein 3 *ENSDARG0000010431511
fhl1a / four and a half LIM domains 1a / FHL1* / Fhl4* / Q13642* / P97447* / four and a half LIM domains 1* / Four and a half LIM domains protein 1 *ENSDARG0000007149811
fhl5 / four and a half LIM domains 5 / Q5TD97* / Q9WTX7* / Four and a half LIM domains protein 5 *ENSDARG0000001480510


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR001781  Zinc finger, LIM-type
 IPR031847  Domain of unknown function DUF4749


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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