ENSGALG00000029382


Gallus gallus

Features
Gene ID: ENSGALG00000029382
  
Biological name :BARX2
  
Synonyms : BARX2 / BARX homeobox 2
  
Possible biological names infered from orthology : Homeobox protein BarH-like 2 / O08686 / Q9UMQ3
  
Species: Gallus gallus
  
Chr. number: 24
Strand: 1
Band:
Gene start: 1345215
Gene end: 1371346
  
Corresponding Affymetrix probe sets: Gga.3060.1.S1_at (Chicken Array)   Gga.3060.1.S2_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000051619
NCBI entrez gene - 395714     See in Manteia.
RefSeq - NM_204896
RefSeq Peptide - NP_990227
swissprot - Q9W694
Ensembl - ENSGALG00000029382
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 barx2ENSDARG00000041098Danio rerio
 BARX2ENSG00000043039Homo sapiens
 Barx2ENSMUSG00000032033Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
BARX1 / Q9DED6 / Homeobox protein BarH-like 1b / Q9ER42* / Q9HBU1* / BARX homeobox 1* / Homeobox protein BarH-like 1 *ENSGALG0000003555740
BARHL1 / BarH like homeobox 1 / P63157* / Q9BZE3* / BarH-like 1 homeobox protein *ENSGALG0000004321727
BARHL2 / BarH like homeobox 2 / Q8VIB5* / Q9NY43* / BarH-like 2 homeobox protein *ENSGALG0000004006926
BSX / Q6RFL5 / Brain-specific homeobox protein homolog / Q3C1V8* / Q810B3* / brain specific homeobox*ENSGALG0000000651526
LBX1* / P52954* / P52955* / ladybird homeobox 1* / Transcription factor LBX1 *ENSGALG0000003418921
HLX / H2.0 like homeobox / Q14774* / Q61670* / H2.0-like homeobox protein *ENSGALG0000003725721
DBX1 / developing brain homeobox 1 / A6NMT0* / P52950* / Homeobox protein DBX1 *ENSGALG0000000396521
TLX1 / T-cell leukemia homeobox protein 1 / P31314* / T cell leukemia homeobox 1*ENSGALG0000000783120
DBX2 / developing brain homeobox 2 / Q6ZNG2*ENSGALG0000000960420
NKX6-2 / NK6 homeobox 2 / Q9C056*ENSGALG0000001050020
ENSGALG0000000219120
HHEX / hematopoietically-expressed homeobox protein HHEX / P43120* / Q03014* / hematopoietically expressed homeobox*ENSGALG0000003000819
NKX6-1 / NK6 homeobox 1 / P78426* / Q99MA9* / Homeobox protein Nkx-6.1 *ENSGALG0000003254518
NKX6-3 / NK6 homeobox 3 / A6NJ46* / Q3UHX8* / Homeobox protein Nkx-6.3 *ENSGALG0000001850318


Protein motifs (from Interpro)
Interpro ID Name
 IPR000047  Helix-turn-helix motif
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0001502 cartilage condensation IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0014902 myotube differentiation IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005667 transcription factor complex IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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