ENSGALG00000036484


Gallus gallus

Features
Gene ID: ENSGALG00000036484
  
Biological name :NCAN
  
Synonyms : NCAN / neurocan core protein precursor
  
Possible biological names infered from orthology : neurocan / O14594
  
Species: Gallus gallus
  
Chr. number: 28
Strand: -1
Band:
Gene start: 3561216
Gene end: 3574042
  
Corresponding Affymetrix probe sets: Gga.1517.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000047608
NCBI entrez gene - 395493     See in Manteia.
RefSeq - NM_204740
RefSeq - XM_015300026
RefSeq Peptide - NP_990071
swissprot - A0A1D5P4J8
Ensembl - ENSGALG00000036484
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CU861477.1ENSDARG00000100128Danio rerio
 ncanbENSDARG00000005783Danio rerio
 NCANENSG00000130287Homo sapiens
 NcanENSMUSG00000002341Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
VCAN / versican core protein precursor / P13611* / versican*ENSGALG0000001562428
ACAN / Q61282* / aggrecan* / Aggrecan core protein *ENSGALG0000000672527
BCAN / brevican / Q61361* / Q96GW7* / Brevican core protein *ENSGALG0000004546924
STAB1 / stabilin 1 / Q9NY15*ENSGALG0000004367211
HAPLN4 / hyaluronan and proteoglycan link protein 4 / Q80WM4* / Q86UW8*ENSGALG0000002656310
HAPLN3 / hyaluronan and proteoglycan link protein 3 / Q80WM5* / Q96S86*ENSGALG0000002113510
HAPLN2 / hyaluronan and proteoglycan link protein 2 / Q9ESM3* / Q9GZV7*ENSGALG0000001323410
HAPLN1 / P07354 / Hyaluronan and proteoglycan link protein 1 / P10915* / Q9QUP5*ENSGALG000000156279
ENSGALG000000392455
TNFAIP6 / TNF alpha induced protein 6 / O08859* / P98066* / tumor necrosis factor alpha induced protein 6*ENSGALG000000124815
ENSGALG000000298242
ENSGALG000000413600


Protein motifs (from Interpro)
Interpro ID Name
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000436  Sushi/SCR/CCP domain
 IPR000538  Link domain
 IPR000742  EGF-like domain
 IPR001304  C-type lectin-like
 IPR001881  EGF-like calcium-binding domain
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR013032  EGF-like, conserved site
 IPR013106  Immunoglobulin V-set domain
 IPR013783  Immunoglobulin-like fold
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold
 IPR018097  EGF-like calcium-binding, conserved site
 IPR018378  C-type lectin, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005540 hyaluronic acid binding IEA


Pathways (from Reactome)
Pathway description
A tetrasaccharide linker sequence is required for GAG synthesis
Chondroitin sulfate biosynthesis
Dermatan sulfate biosynthesis
CS/DS degradation
ECM proteoglycans


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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