ENSGALG00000040784


Gallus gallus

Features
Gene ID: ENSGALG00000040784
  
Biological name :RAB39B
  
Synonyms : RAB39B / RAB39B, member RAS oncogene family
  
Possible biological names infered from orthology : Q8BHC1 / Q96DA2
  
Species: Gallus gallus
  
Chr. number: 4
Strand: 1
Band:
Gene start: 14247262
Gene end: 14251116
  
Corresponding Affymetrix probe sets: Gga.18891.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000058097
NCBI entrez gene - 422354     See in Manteia.
RefSeq - XM_420326
swissprot - A0A1D5PYP2
Ensembl - ENSGALG00000040784
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rab39baENSDARG00000019312Danio rerio
 rab39bbENSDARG00000036501Danio rerio
 Q96DA2ENSG00000155961Homo sapiens
 Q8BHC1ENSMUSG00000031202Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RAB39A / RAB39A, member RAS oncogene family / Rab39* / Q8BHD0* / Q14964* / RAB39, member RAS oncogene family*ENSGALG0000001716681
RAB42* / Q0PD08* / Q8N4Z0* / Ras-related protein Rab-42 * / RAB42, member RAS oncogene family*ENSGALG0000000099454
RAB2A / Q90965 / Ras-related protein Rab-2A / P61019* / P53994* / RAB2A, member RAS oncogene family*ENSGALG0000001545041
Q5ZJN2 / RAB11A / Ras-related protein Rab-11A / P62491* / P62492* / RAB11A, member RAS oncogene family*ENSGALG0000000761541
RAB11B / ras-related protein Rab-11B ENSGALG0000000061339
RAB25* / P57735* / Q9WTL2* / RAB25, member RAS oncogene family*ENSGALG0000002981238
RAB4A / RAB4A, member RAS oncogene family / P20338* / P56371* / Ras-related protein Rab-4A *ENSGALG0000003621838
RAB14 / Q5ZKU5 / Ras-related protein Rab-14 / Q91V41* / P61106* / RAB14, member RAS oncogene family*ENSGALG0000000147437
RAB11B / RAB11B, member RAS oncogene family / P46638* / Q15907*ENSGALG0000003780236
RAB18 / Q5ZLG1 / Ras-related protein Rab-18 / Q9NP72* / P35293* / RAB18, member RAS oncogene family*ENSGALG0000000743534
ENSGALG0000004043421


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010506 regulation of autophagy IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0050808 synapse organization IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0031982 vesicle IEA
 cellular_componentGO:0043005 neuron projection IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA
 molecular_functionGO:0031489 myosin V binding IEA


Pathways (from Reactome)
Pathway description
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr