ENSMUSG00000031202


Mus musculus

Features
Gene ID: ENSMUSG00000031202
  
Biological name :Rab39b
  
Synonyms : Q8BHC1 / Rab39b / RAB39B, member RAS oncogene family
  
Possible biological names infered from orthology : Q96DA2
  
Species: Mus musculus
  
Chr. number: X
Strand: -1
Band: A7.3
Gene start: 75572046
Gene end: 75578231
  
Corresponding Affymetrix probe sets: 10605431 (MoGene1.0st)   1435014_at (Mouse Genome 430 2.0 Array)   1453246_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000033545
NCBI entrez gene - 67790     See in Manteia.
MGI - MGI:1915040
RefSeq - NM_175122
RefSeq Peptide - NP_780331
swissprot - Q0PD14
swissprot - Q8BHC1
Ensembl - ENSMUSG00000031202
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rab39baENSDARG00000019312Danio rerio
 rab39bbENSDARG00000036501Danio rerio
 RAB39BENSGALG00000040784Gallus gallus
 Q96DA2ENSG00000155961Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Rab39 / Q8BHD0 / RAB39, member RAS oncogene family / Q14964* / RAB39A* / RAB39A, member RAS oncogene family*ENSMUSG0000005506977
Rab42 / Q0PD08 / Ras-related protein Rab-42 / Q8N4Z0* / RAB42, member RAS oncogene family*ENSMUSG0000008968745
Rab2a / P53994 / Ras-related protein Rab-2A / P61019* / RAB2A, member RAS oncogene family*ENSMUSG0000004718742
P62492 / Rab11a / RAB11A, member RAS oncogene family / P62491*ENSMUSG0000000477141
Rab2b / P59279 / RAB2B, member RAS oncogene family / Q8WUD1*ENSMUSG0000002215941
Rab4b / Q91ZR1 / RAB4B, member RAS oncogene family / P61018* / RAB4B-EGLN2* / RAB4B-EGLN2 readthrough (NMD candidate)*ENSMUSG0000005329140
P46638 / Rab11b / RAB11B, member RAS oncogene family / Q15907*ENSMUSG0000007745039
Rab4a / P56371 / Ras-related protein Rab-4A / P20338* / RAB4A, member RAS oncogene family*ENSMUSG0000001947838
Rab14 / Q91V41 / RAB14, member RAS oncogene family / P61106*ENSMUSG0000002687837
Rab25 / Q9WTL2 / RAB25, member RAS oncogene family / P57735*ENSMUSG0000000860136
Rab18 / P35293 / RAB18, member RAS oncogene family / Q9NP72*ENSMUSG0000007363934


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0010506 regulation of autophagy IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IMP
 biological_processGO:0050808 synapse organization IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005794 Golgi apparatus ISO
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030659 cytoplasmic vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0031982 vesicle IEA
 cellular_componentGO:0043005 neuron projection IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005525 GTP binding IEA
 molecular_functionGO:0031489 myosin V binding IEA


Pathways (from Reactome)
Pathway description
RAB geranylgeranylation
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr