ENSMUSG00000009733


Mus musculus

Features
Gene ID: ENSMUSG00000009733
  
Biological name :Tfcp2
  
Synonyms : Mus musculus transcription factor CP2 (Tfcp2), transcript variant 3, mRNA. / Q9ERA0 / Tfcp2
  
Possible biological names infered from orthology : Q12800 / transcription factor CP2
  
Species: Mus musculus
  
Chr. number: 15
Strand: -1
Band: F1
Gene start: 100498012
Gene end: 100552008
  
Corresponding Affymetrix probe sets: 10432601 (MoGene1.0st)   1418159_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000009877
Ensembl peptide - ENSMUSP00000155196
Ensembl peptide - ENSMUSP00000155581
Ensembl peptide - ENSMUSP00000155683
Ensembl peptide - ENSMUSP00000155770
Ensembl peptide - ENSMUSP00000155598
NCBI entrez gene - 21422     See in Manteia.
MGI - MGI:98509
RefSeq - XM_017316541
RefSeq - NM_001289603
RefSeq - NM_001355497
RefSeq - NM_033476
RefSeq - XM_017316537
RefSeq - XM_017316538
RefSeq - XM_017316539
RefSeq - XM_017316540
RefSeq - XM_006520738
RefSeq Peptide - NP_001342426
RefSeq Peptide - NP_258437
RefSeq Peptide - NP_001276532
swissprot - Q9ERA0
Ensembl - ENSMUSG00000009733
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tfcp2ENSDARG00000060306Danio rerio
 TFCP2ENSG00000135457Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Ubp1 / Q811S7 / upstream binding protein 1 / Q9NZI7*ENSMUSG0000000974173
Q3UNW5 / Tfcp2l1 / Transcription factor CP2-like protein 1 / Q9NZI6* / transcription factor CP2 like 1*ENSMUSG0000002638068
Grhl1 / Q921D9 / Grainyhead-like / Q9NZI5* / grainyhead like transcription factor 1*ENSMUSG0000002065625
Grhl2 / Q8K5C0 / Grainyhead-like / Q6ISB3* / grainyhead like transcription factor 2*ENSMUSG0000002228624
Grhl3 / Q5FWH3 / Grainyhead-like / Q8TE85* / grainyhead like transcription factor 3*ENSMUSG0000003718823


Protein motifs (from Interpro)
Interpro ID Name
 IPR007604  CP2 transcription factor
 IPR013761  Sterile alpha motif/pointed domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0042789 mRNA transcription by RNA polymerase II ISO
 biological_processGO:0045893 positive regulation of transcription, DNA-templated TAS
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005654 nucleoplasm ISO
 cellular_componentGO:0005667 transcription factor complex TAS
 cellular_componentGO:0005829 cytosol ISO
 cellular_componentGO:0032991 protein-containing complex IDA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0000987 proximal promoter sequence-specific DNA binding ISO
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0008022 protein C-terminus binding ISO
 molecular_functionGO:0008134 transcription factor binding ISO
 molecular_functionGO:0043565 sequence-specific DNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: at-2Gso/at-2Gso
Genetic Background: involves: C57BL/RlGso * SEC/RlGso

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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