ENSMUSG00000020620


Mus musculus

Features
Gene ID: ENSMUSG00000020620
  
Biological name :Abca8b
  
Synonyms : Abca8b / ATP-binding cassette, sub-family A (ABC1), member 8b / Q8K440
  
Possible biological names infered from orthology : ABCA8 / ATP binding cassette subfamily A member 8 / O94911
  
Species: Mus musculus
  
Chr. number: 11
Strand: -1
Band: E1
Gene start: 109932190
Gene end: 109995845
  
Corresponding Affymetrix probe sets: 10392484 (MoGene1.0st)   1427546_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000020948
Ensembl peptide - ENSMUSP00000102280
NCBI entrez gene - 27404     See in Manteia.
MGI - MGI:1351668
RefSeq - XM_006533463
RefSeq - NM_013851
RefSeq - XM_006533460
RefSeq - XM_006533461
RefSeq - XM_006533462
RefSeq - XM_006533459
RefSeq Peptide - NP_038879
swissprot - Q8K440
swissprot - A2AM56
Ensembl - ENSMUSG00000020620
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000021399Gallus gallus
 ENSGALG00000021395Gallus gallus
 ABCA8ENSG00000141338Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Abca8a / Q8K442 / ATP-binding cassette, sub-family A (ABC1), member 8aENSMUSG0000004182867
Abca9 / Q8K449 / ATP-binding cassette, sub-family A (ABC1), member 9 / Q8IUA7* / ATP binding cassette subfamily A member 9*ENSMUSG0000004179763
Abca6 / Q8K441 / ATP-binding cassette, sub-family A (ABC1), member 6 / Q8N139* / ATP binding cassette subfamily A member 6*ENSMUSG0000004474952
Abca5 / Q8K448 / ATP-binding cassette, sub-family A (ABC1), member 5 / Q8WWZ7* / ATP binding cassette subfamily A member 5*ENSMUSG0000001880042
Abca2 / ATP-binding cassette, sub-family A (ABC1), member 2 / Q9BZC7* / ATP binding cassette subfamily A member 2*ENSMUSG0000002694426
Abca4 / O35600 / ATP-binding cassette, sub-family A (ABC1), member 4 / P78363* / ATP binding cassette subfamily A member 4*ENSMUSG0000002812526
Abca1 / P41233 / ATP-binding cassette, sub-family A (ABC1), member 1 / O95477* / ATP binding cassette subfamily A member 1*ENSMUSG0000001524326
Abca3 / Q8R420 / ATP-binding cassette, sub-family A (ABC1), member 3 / Q99758* / ATP binding cassette subfamily A member 3*ENSMUSG0000002413026
Abca7 / Q91V24 / ATP-binding cassette, sub-family A (ABC1), member 7 / Q8IZY2* / ATP binding cassette subfamily A member 7*ENSMUSG0000003572226
Abca13 / Q5SSE9 / ATP-binding cassette, sub-family A (ABC1), member 13 / Q86UQ4* / ATP binding cassette subfamily A member 13*ENSMUSG0000000466825
Abca12 / ATP-binding cassette, sub-family A (ABC1), member 12 / Q86UK0* / ATP binding cassette subfamily A member 12*ENSMUSG0000005029625
Abca14 / ATP-binding cassette, sub-family A (ABC1), member 14ENSMUSG0000006201725
Abca15 / ATP-binding cassette, sub-family A (ABC1), member 15ENSMUSG0000005474624
Abca16 / ATP-binding cassette, sub-family A (ABC1), member 16ENSMUSG0000005190024
Abca17 / E9PX95 / ATP-binding cassette, sub-family A (ABC1), member 17ENSMUSG0000003543523


Protein motifs (from Interpro)
Interpro ID Name
 IPR003439  ABC transporter-like
 IPR003593  AAA+ ATPase domain
 IPR017871  ABC transporter, conserved site
 IPR020846  Major facilitator superfamily domain
 IPR026082  ABC transporter A
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006869 lipid transport IBA
 biological_processGO:0055085 transmembrane transport IEA
 cellular_componentGO:0005743 mitochondrial inner membrane IDA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016887 ATPase activity IEA
 molecular_functionGO:0042626 ATPase activity, coupled to transmembrane movement of substances ISO


Pathways (from Reactome)
Pathway description
ABC-family proteins mediated transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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