ENSDARG00000054451


Danio rerio

Features
Gene ID: ENSDARG00000054451
  
Biological name :loxl1
  
Synonyms : loxl1 / lysyl oxidase-like 1
  
Possible biological names infered from orthology : Q08397
  
Species: Danio rerio
  
Chr. number: 18
Strand: -1
Band:
Gene start: 50124297
Gene end: 50152689
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000109770
Ensembl peptide - ENSDARP00000018477
NCBI entrez gene - 560115     See in Manteia.
RefSeq - NM_001043325
RefSeq Peptide - NP_001036790
swissprot - F1QXN1
swissprot - F1QD91
ZFIN ID - ZDB-GENE-060503-693
Ensembl - ENSDARG00000054451
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LOXL1ENSG00000129038Homo sapiens
 Loxl1ENSMUSG00000032334Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
loxa / lysyl oxidase aENSDARG0000000325937
loxl5b / lysyl oxidase-like 5bENSDARG0000007690434
loxl5a / lysyl oxidase-like 5aENSDARG0000007168033
B8A4W9 / loxl3b / lysyl oxidase-like 3bENSDARG0000003956329
F1QQC3 / loxl2a / lysyl oxidase-like 2a / LOXL2* / Q9Y4K0* / lysyl oxidase like 2*ENSDARG0000004401029
loxl2b / A1L1V4 / lysyl oxidase-like 2b / LOXL2* / Q9Y4K0* / P58022* / lysyl oxidase like 2* / Lysyl oxidase homolog 2 *ENSDARG0000004407429
F1RD85 / loxl3a / lysyl oxidase-like 3aENSDARG0000007630628
loxl4 / lysyl oxidase-like 4ENSDARG0000002508927
si:cabz01100188.1ENSDARG0000010544211
si:dkey-21h14.3ENSDARG000000960478
si:dkey-242e21.3 / CD6* / P30203* / Q61003* / CD6 molecule* / T-cell differentiation antigen CD6 *ENSDARG000000757237
si:ch211-150o23.3ENSDARG000000785026
scara5 / Q5RFW0 / scavenger receptor class A, member 5 (putative) / Q8K299* / Q6ZMJ2* / scavenger receptor class A member 5*ENSDARG000000104254
marco / macrophage receptor with collagenous structure / Q9UEW3*ENSDARG000000592943
CT583642.2ENSDARG000001113152


Protein motifs (from Interpro)
Interpro ID Name
 IPR001695  Lysyl oxidase
 IPR013783  Immunoglobulin-like fold
 IPR019828  Lysyl oxidase, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030903 notochord development IMP
 biological_processGO:0055114 oxidation-reduction process IEA
 molecular_functionGO:0005507 copper ion binding IEA
 molecular_functionGO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEA


Pathways (from Reactome)
Pathway description
Crosslinking of collagen fibrils


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000135 notochord notochord deformed , abnormal
Show

 ZFA:0000155 somite somite morphology , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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