ENSDARG00000111977


Danio rerio

Features
Gene ID: ENSDARG00000111977
  
Biological name :gjd1a
  
Synonyms : gap junction protein delta 1a / gjd1a
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 36974931
Gene end: 36997238
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000152684
NCBI entrez gene - 572372     See in Manteia.
RefSeq - NM_001128766
RefSeq Peptide - NP_001122238
swissprot - B3DHR0
ZFIN ID - ZDB-GENE-080723-77
Ensembl - ENSDARG00000111977
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
gjd2b / gap junction protein delta 2b / GJD2* / O54851* / Q9UKL4* / gap junction protein delta 2*ENSDARG0000007078176
CABZ01084793.1ENSDARG0000006799967
cx36.7 / connexin 36.7ENSDARG0000001792741
gja3 / gap junction protein, alpha 3 / Q64448* / Q9Y6H8*ENSDARG0000002188936
gja8b / gap junction protein alpha 8 paralog b / GJA8* / P28236* / P48165* / gap junction protein alpha 8*ENSDARG0000001507635
gja8a / gap junction protein alpha 8 paralog a / GJA8* / P28236* / P48165* / gap junction protein alpha 8*ENSDARG0000006945135
cx39.9 / connexin 39.9ENSDARG0000000408234
cx52.6 / connexin 52.6 / GJA10* / Q9WUS4* / Q969M2* / gap junction protein alpha 10*ENSDARG0000003493034
cx52.7 / connexin 52.7 / GJA10* / Q9WUS4* / Q969M2* / gap junction protein alpha 10*ENSDARG0000005779234
cx47.1 / connexin 47.1 / GJC2* / Q8BQU6* / Q5T442* / gap junction protein gamma 2*ENSDARG0000007389634
cx43.4 / connexin 43.4ENSDARG0000000709933
cx34.5 / connexin 34.5ENSDARG0000006941133
cx44.2 / connexin 44.2 / si:dkey-91f15.8ENSDARG0000003420732
gja5a / gap junction protein, alpha 5a / GJA5* / P36382* / Q01231* / gap junction protein alpha 5*ENSDARG0000004006532
cx32.3 / connexin 32.3ENSDARG0000004178732
cx28.9 / connexin 28.9ENSDARG0000004179732
cx43 / O57474 / connexin 43ENSDARG0000004179931
cx40.8 / connexin 40.8 / GJA1* / P23242* / P17302* / gap junction protein alpha 1*ENSDARG0000007119231
cx52.9 / connexin 52.9 / GJA9* / P57773* / gap junction protein alpha 9*ENSDARG0000008645331
si:dkey-91f15.1ENSDARG0000009499031


Protein motifs (from Interpro)
Interpro ID Name
 IPR000500  Connexin
 IPR013092  Connexin, N-terminal
 IPR017990  Connexin, conserved site
 IPR019570  Gap junction protein, cysteine-rich domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007154 cell communication IEA
 biological_processGO:0007416 synapse assembly IMP
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005921 gap junction IEA
 cellular_componentGO:0005922 connexin complex IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0032279 asymmetric synapse IMP
 cellular_componentGO:0099055 integral component of postsynaptic membrane IMP
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000247 cranial nerve VIII cranial nerve VIII synapse absent , abnormal
cranial nerve VIII synapse decreased amount , abnormal
Show

 ZFA:0000778 spinal cord interneuron spinal cord interneuron synapse assembly arrested , abnormal
spinal cord interneuron synapse absent , abnormal
Show

 ZFA:0009149 Mauthner neuron Mauthner neuron synapse absent , abnormal
Mauthner neuron synapse assembly arrested , abnormal
Mauthner neuron synapse non-functional , abnormal
Show

 ZFA:0009238 afferent neuron afferent neuron synapse assembly decreased occurrence , abnormal
afferent neuron synapse absent , abnormal
afferent neuron synapse decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr