ENSDARG00000004082


Danio rerio

Features
Gene ID: ENSDARG00000004082
  
Biological name :cx39.9
  
Synonyms : connexin 39.9 / cx39.9
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 23630384
Gene end: 23635908
  
Corresponding Affymetrix probe sets: DrAffx.1.54.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000107852
Ensembl peptide - ENSDARP00000111351
NCBI entrez gene - 404726     See in Manteia.
swissprot - B0R0X0
swissprot - F1R2M4
ZFIN ID - ZDB-GENE-040406-2
Ensembl - ENSDARG00000004082
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
gja3 / gap junction protein, alpha 3 / Q64448* / Q9Y6H8*ENSDARG0000002188956
gja8a / gap junction protein alpha 8 paralog a / GJA8* / P28236* / P48165* / gap junction protein alpha 8*ENSDARG0000006945147
gja8b / gap junction protein alpha 8 paralog b / GJA8* / P28236* / P48165* / gap junction protein alpha 8*ENSDARG0000001507646
gja5a / gap junction protein, alpha 5a / GJA5* / P36382* / Q01231* / gap junction protein alpha 5*ENSDARG0000004006545
cx43 / O57474 / connexin 43ENSDARG0000004179944
gja5b / gap junction protein, alpha 5b / GJA5* / P36382* / Q01231* / gap junction protein alpha 5*ENSDARG0000006945043
cx32.3 / connexin 32.3ENSDARG0000004178742
cx52.6 / connexin 52.6 / GJA10* / Q9WUS4* / Q969M2* / gap junction protein alpha 10*ENSDARG0000003493041
cx28.9 / connexin 28.9ENSDARG0000004179741
cx52.7 / connexin 52.7 / GJA10* / Q9WUS4* / Q969M2* / gap junction protein alpha 10*ENSDARG0000005779240
cx40.8 / connexin 40.8 / GJA1* / P23242* / P17302* / gap junction protein alpha 1*ENSDARG0000007119240
cx34.5 / connexin 34.5ENSDARG0000006941139
cx52.9 / connexin 52.9 / GJA9* / P57773* / gap junction protein alpha 9*ENSDARG0000008645337
cx32.2 / Q7T047 / connexin 32.2ENSDARG0000007678936
cx28.1 / connexin 28.1ENSDARG0000004179234
cx39.4 / connexin 39.4 / GJA4* / P35212* / P28235* / gap junction protein alpha 4*ENSDARG0000007035734
cx47.1 / connexin 47.1 / GJC2* / Q8BQU6* / Q5T442* / gap junction protein gamma 2*ENSDARG0000007389632
cx43.4 / connexin 43.4ENSDARG0000000709931
cx44.2 / connexin 44.2 / si:dkey-91f15.8ENSDARG0000003420729
gjd2b / gap junction protein delta 2b / GJD2* / O54851* / Q9UKL4* / gap junction protein delta 2*ENSDARG0000007078129


Protein motifs (from Interpro)
Interpro ID Name
 IPR000500  Connexin
 IPR013092  Connexin, N-terminal
 IPR017990  Connexin, conserved site
 IPR019570  Gap junction protein, cysteine-rich domain
 IPR034634  Connexin, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007154 cell communication IEA
 biological_processGO:0010644 cell communication by electrical coupling IMP
 biological_processGO:0031444 slow-twitch skeletal muscle fiber contraction IMP
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005921 gap junction IEA
 cellular_componentGO:0005922 connexin complex IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000473 trunk musculature trunk musculature slow muscle cell decreased contractility , abnormal
trunk musculature decreased contractility , abnormal
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 ZFA:0001094 whole organism whole organism movement behavioral quality , abnormal
Show

 ZFA:0001115 trunk trunk decreased angle to whole organism anterior-posterior axis, abnormal
Show

 ZFA:0001117 post-vent region post-vent region slow muscle cell decreased contractility , abnormal
post-vent region decreased contractility , abnormal
Show

 ZFA:0009116 slow muscle cell slow muscle cell electrical conductivity , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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