ENSDARG00000070357


Danio rerio

Features
Gene ID: ENSDARG00000070357
  
Biological name :cx39.4
  
Synonyms : connexin 39.4 / cx39.4
  
Possible biological names infered from orthology : gap junction protein alpha 4 / GJA4 / P28235 / P35212
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 37153409
Gene end: 37154436
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000093929
NCBI entrez gene - 557275     See in Manteia.
RefSeq - NM_001044823
RefSeq Peptide - NP_001038288
swissprot - Q1LWG0
ZFIN ID - ZDB-GENE-050616-6
Ensembl - ENSDARG00000070357
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GJA4ENSGALG00000002532Gallus gallus
 GJA4ENSG00000187513Homo sapiens
 Gja4ENSMUSG00000050234Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cx43 / O57474 / connexin 43ENSDARG0000004179939
gja3 / gap junction protein, alpha 3 / Q64448* / Q9Y6H8*ENSDARG0000002188938
gja8b / gap junction protein alpha 8 paralog b / GJA8* / P28236* / P48165* / gap junction protein alpha 8*ENSDARG0000001507637
gja8a / gap junction protein alpha 8 paralog a / GJA8* / P28236* / P48165* / gap junction protein alpha 8*ENSDARG0000006945137
cx39.9 / connexin 39.9ENSDARG0000000408235
cx52.6 / connexin 52.6 / GJA10* / Q9WUS4* / Q969M2* / gap junction protein alpha 10*ENSDARG0000003493035
gja5a / gap junction protein, alpha 5a / GJA5* / P36382* / Q01231* / gap junction protein alpha 5*ENSDARG0000004006535
cx32.3 / connexin 32.3ENSDARG0000004178735
cx34.5 / connexin 34.5ENSDARG0000006941135
cx40.8 / connexin 40.8 / GJA1* / P23242* / P17302* / gap junction protein alpha 1*ENSDARG0000007119235
gja5b / gap junction protein, alpha 5b / GJA5* / P36382* / Q01231* / gap junction protein alpha 5*ENSDARG0000006945034
cx28.9 / connexin 28.9ENSDARG0000004179733
cx52.9 / connexin 52.9 / GJA9* / P57773* / gap junction protein alpha 9*ENSDARG0000008645333
cx52.7 / connexin 52.7 / GJA10* / Q9WUS4* / Q969M2* / gap junction protein alpha 10*ENSDARG0000005779232
cx32.2 / Q7T047 / connexin 32.2ENSDARG0000007678931
cx43.4 / connexin 43.4ENSDARG0000000709930
cx44.2 / connexin 44.2 / si:dkey-91f15.8ENSDARG0000003420730
si:dkey-91f15.1ENSDARG0000009499030
cx28.1 / connexin 28.1ENSDARG0000004179228
cx47.1 / connexin 47.1 / GJC2* / Q8BQU6* / Q5T442* / gap junction protein gamma 2*ENSDARG0000007389628


Protein motifs (from Interpro)
Interpro ID Name
 IPR000500  Connexin
 IPR013092  Connexin, N-terminal
 IPR017990  Connexin, conserved site
 IPR019570  Gap junction protein, cysteine-rich domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007154 cell communication IEA
 biological_processGO:0043473 pigmentation IMP
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005921 gap junction IEA
 cellular_componentGO:0005922 connexin complex IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000368 integument integument pigmentation disrupted , abnormal
Show

 ZFA:0001094 whole organism whole organism mottled , abnormal
whole organism dappled , abnormal
Show

 ZFA:0001463 melanophore stripe melanophore stripe spotted , abnormal
melanophore stripe patchy , abnormal
melanophore stripe broken , abnormal
melanophore stripe undulate , abnormal
melanophore stripe disheveled , abnormal
melanophore stripe absent , abnormal
melanophore stripe spatial pattern , abnormal
Show

 ZFA:0009091 melanocyte melanocyte distributed , abnormal
melanocyte dispersed , abnormal
Show

 ZFA:0009199 iridophore iridophore pigmentation process quality , abnormal
iridophore dispersed , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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