ENSDARG00000013615


Danio rerio

Features
Gene ID: ENSDARG00000013615
  
Biological name :pbx3b
  
Synonyms : pbx3b / pre-B-cell leukemia homeobox 3b
  
Possible biological names infered from orthology : O35317 / P40426 / PBX3 / PBX homeobox 3 / Pre-B-cell leukemia transcription factor 3
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 33895773
Gene end: 34065573
  
Corresponding Affymetrix probe sets: Dr.8173.1.S1_at (Zebrafish Array)   NM_131616_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000136557
Ensembl peptide - ENSDARP00000153654
Ensembl peptide - ENSDARP00000140154
Ensembl peptide - ENSDARP00000139258
Ensembl peptide - ENSDARP00000130018
Ensembl peptide - ENSDARP00000132516
NCBI entrez gene - 58140     See in Manteia.
RefSeq - NM_131616
RefSeq - NM_001328420
RefSeq Peptide - NP_001315349
RefSeq Peptide - NP_571691
swissprot - B0V334
swissprot - A4UU10
swissprot - A0A0R4IB75
swissprot - Q9I9B5
ZFIN ID - ZDB-GENE-000405-3
Ensembl - ENSDARG00000013615
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PBX3ENSGALG00000000972Gallus gallus
 PBX3ENSG00000167081Homo sapiens
 Pbx3ENSMUSG00000038718Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pbx3a / pre-B-cell leukemia homeobox 3a / PBX3* / P40426* / O35317* / PBX homeobox 3* / Pre-B-cell leukemia transcription factor 3 *ENSDARG0000008926274
pbx1a / pre-B-cell leukemia homeobox 1a / PBX1* / P41778* / P40424* / PBX homeobox 1* / Pre-B-cell leukemia transcription factor 1 *ENSDARG0000010049473
pbx1b / pre-B-cell leukemia homeobox 1b / PBX1* / P40424* / PBX homeobox 1*ENSDARG0000010113173
pbx4 / pre-B-cell leukemia transcription factor 4 / Q99NE9* / Q9BYU1* / PBX homeobox 4* / Mus musculus pre B cell leukemia homeobox 4 (Pbx4), transcript variant 4, mRNA.*ENSDARG0000005215070
pbx2 / pre-B-cell leukemia homeobox 2 / O35984* / P40425* / PBX homeobox 2*ENSDARG0000001971766


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR005542  PBX
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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