ENSDARG00000015392


Danio rerio

Features
Gene ID: ENSDARG00000015392
  
Biological name :dhx15
  
Synonyms : DEAH (Asp-Glu-Ala-His) box helicase 15 / dhx15
  
Possible biological names infered from orthology : DEAH-box helicase 15 / O35286 / O43143 / Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 71278625
Gene end: 71331690
  
Corresponding Affymetrix probe sets: Dr.4024.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000075688
Ensembl peptide - ENSDARP00000124169
NCBI entrez gene - 321931     See in Manteia.
RefSeq - NM_001115141
RefSeq Peptide - NP_001108613
swissprot - F8W4Q9
swissprot - E7F3I8
ZFIN ID - ZDB-GENE-030131-650
Ensembl - ENSDARG00000015392
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DHX15ENSGALG00000014395Gallus gallus
 DHX15ENSG00000109606Homo sapiens
 Dhx15ENSMUSG00000029169Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
dhx8 / DEAH (Asp-Glu-Ala-His) box polypeptide 8 / Q14562* / A2A4P0* / DEAH-box helicase 8* / ATP-dependent RNA helicase DHX8 *ENSDARG0000005470748
dhx16 / DEAH (Asp-Glu-Ala-His) box polypeptide 16 / O60231* / DEAH-box helicase 16*ENSDARG0000001315047
dhx38 / DEAH (Asp-Glu-Ala-His) box polypeptide 38 / Q92620* / DEAH-box helicase 38*ENSDARG0000010001341
dhx33 / DEAH (Asp-Glu-Ala-His) box polypeptide 33 / Q80VY9* / Q9H6R0* / DEAH-box helicase 33* / Putative ATP-dependent RNA helicase DHX33 *ENSDARG0000005178538
dhx40 / DEAH (Asp-Glu-Ala-His) box polypeptide 40 / Q6PE54* / Q8IX18* / DEAH-box helicase 40* / Probable ATP-dependent RNA helicase DHX40 *ENSDARG0000004158634
dhx34 / DEAH (Asp-Glu-Ala-His) box polypeptide 34 / Q14147* / DExH-box helicase 34*ENSDARG0000006116830
DHX35 / zgc:158828 / Q9H5Z1* / DEAH-box helicase 35* / probable ATP-dependent RNA helicase DHX35 isoform b *ENSDARG0000006341928


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR002464  DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
 IPR007502  Helicase-associated domain
 IPR011545  DEAD/DEAH box helicase domain
 IPR011709  Domain of unknown function DUF1605
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 cellular_componentGO:0005681 spliceosomal complex IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr