ENSDARG00000041586


Danio rerio

Features
Gene ID: ENSDARG00000041586
  
Biological name :dhx40
  
Synonyms : DEAH (Asp-Glu-Ala-His) box polypeptide 40 / dhx40
  
Possible biological names infered from orthology : DEAH-box helicase 40 / Probable ATP-dependent RNA helicase DHX40 / Q6PE54 / Q8IX18
  
Species: Danio rerio
  
Chr. number: 15
Strand: 1
Band:
Gene start: 17258246
Gene end: 17285188
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000092482
NCBI entrez gene - 570225     See in Manteia.
swissprot - E7F7R7
ZFIN ID - ZDB-GENE-080507-1
Ensembl - ENSDARG00000041586
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DHX40ENSGALG00000005126Gallus gallus
 DHX40ENSG00000108406Homo sapiens
 Dhx40ENSMUSG00000018425Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
dhx8 / DEAH (Asp-Glu-Ala-His) box polypeptide 8 / Q14562* / A2A4P0* / DEAH-box helicase 8* / ATP-dependent RNA helicase DHX8 *ENSDARG0000005470740
dhx16 / DEAH (Asp-Glu-Ala-His) box polypeptide 16 / O60231* / DEAH-box helicase 16*ENSDARG0000001315039
dhx38 / DEAH (Asp-Glu-Ala-His) box polypeptide 38 / Q92620* / DEAH-box helicase 38*ENSDARG0000010001338
dhx15 / DEAH (Asp-Glu-Ala-His) box helicase 15 / O35286* / O43143* / DEAH-box helicase 15* / Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 *ENSDARG0000001539235
dhx33 / DEAH (Asp-Glu-Ala-His) box polypeptide 33 / Q80VY9* / Q9H6R0* / DEAH-box helicase 33* / Putative ATP-dependent RNA helicase DHX33 *ENSDARG0000005178534
dhx34 / DEAH (Asp-Glu-Ala-His) box polypeptide 34 / Q14147* / DExH-box helicase 34*ENSDARG0000006116829
DHX35 / zgc:158828 / Q9H5Z1* / DEAH-box helicase 35* / probable ATP-dependent RNA helicase DHX35 isoform b *ENSDARG0000006341923


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR002464  DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
 IPR007502  Helicase-associated domain
 IPR011545  DEAD/DEAH box helicase domain
 IPR011709  Domain of unknown function DUF1605
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 cellular_componentGO:0005681 spliceosomal complex IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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