ENSDARG00000015947


Danio rerio

Features
Gene ID: ENSDARG00000015947
  
Biological name :matn4
  
Synonyms : matn4 / matrilin 4
  
Possible biological names infered from orthology : CLEC14A / C-type lectin domain containing 14A / C-type lectin domain family 14 member A / O95460 / Q86T13 / Q8VCP9
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 52790049
Gene end: 52846194
  
Corresponding Affymetrix probe sets: Dr.3738.1.A1_at (Zebrafish Array)   NM_213549_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000065680
Ensembl peptide - ENSDARP00000021634
NCBI entrez gene - 497348     See in Manteia.
RefSeq - NM_213549
RefSeq - XM_005155871
RefSeq - XM_005155864
RefSeq Peptide - NP_998714
swissprot - Q5NJJ5
swissprot - Q6PYX2
ZFIN ID - ZDB-GENE-050208-64
Ensembl - ENSDARG00000015947
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000004028Gallus gallus
 MATN4ENSG00000124159Homo sapiens
 Q86T13ENSG00000176435Homo sapiens
 Matn4ENSMUSG00000016995Mus musculus
 Q8VCP9ENSMUSG00000045930Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
matn1 / matrilin 1 / P21941* / P51942* / Cartilage matrix protein * / matrilin 1, cartilage matrix protein*ENSDARG0000003021527
matn3a / matrilin 3a / MATN3* / O35701* / O15232* / matrilin 3*ENSDARG0000006924516
matn3b / matrilin 3b / MATN3* / O35701* / O15232* / matrilin 3*ENSDARG0000006926515
scube2 / signal peptide, CUB domain, EGF-like 2 / Q9NQ36* / Q9JJS0* / signal peptide, CUB domain and EGF like domain containing 2* / Signal peptide, CUB and EGF-like domain-containing protein 2 *ENSDARG0000003736214
scube1 / signal peptide, CUB domain, EGF-like 1 / Q6NZL8* / Q8IWY4* / signal peptide, CUB domain and EGF like domain containing 1*ENSDARG0000006309714
scube3 / signal peptide, CUB domain, EGF-like 3 / Q8IX30* / signal peptide, CUB domain and EGF like domain containing 3*ENSDARG0000001149013
cd248a / CD248 molecule, endosialin a / CD248* / Q9HCU0* / Q91V98* / Endosialin * / CD248 molecule*ENSDARG0000010371311
cd248b / CD248 molecule, endosialin b / CD248* / Q9HCU0* / Q91V98* / Endosialin * / CD248 molecule*ENSDARG0000007793811
thbd / thrombomodulin / P07204* / P15306*ENSDARG0000009247010
vwa1 / von Willebrand factor A domain containing 1 / Q6PCB0* / Q8R2Z5*ENSDARG000000754689
si:dkey-163f14.6ENSDARG000000916028


Protein motifs (from Interpro)
Interpro ID Name
 IPR000742  EGF-like domain
 IPR001881  EGF-like calcium-binding domain
 IPR002035  von Willebrand factor, type A
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR013032  EGF-like, conserved site
 IPR019466  Matrilin, coiled-coil trimerisation domain
 IPR026823  Complement Clr-like EGF domain
 IPR034306  Matrilin-4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0000287 magnesium ion binding ISS
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
ECM proteoglycans


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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