ENSDARG00000017193


Danio rerio

Features
Gene ID: ENSDARG00000017193
  
Biological name :cnn1a
  
Synonyms : calponin 1, basic, smooth muscle, a / cnn1a
  
Possible biological names infered from orthology : calponin 1 / CNN1 / P51911 / Q08091
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 52214895
Gene end: 52222989
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000003525
NCBI entrez gene - 567396     See in Manteia.
RefSeq - NM_001145598
RefSeq Peptide - NP_001139070
swissprot - B8A668
ZFIN ID - ZDB-GENE-090312-141
Ensembl - ENSDARG00000017193
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CNN1ENSG00000130176Homo sapiens
 Cnn1ENSMUSG00000001349Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cnn1b / calponin 1, basic, smooth muscle, b / CNN1* / P51911* / Q08091* / calponin 1*ENSDARG0000010239868
cnn3a / calponin 3, acidic a / CNN3* / Q15417* / Q9DAW9* / calponin 3*ENSDARG0000009951063
cnn3b / calponin 3, acidic b / CNN3* / Q15417* / Q9DAW9* / calponin 3*ENSDARG0000002985663
cnn2 / calponin 2 / Q08093* / Q99439*ENSDARG0000003585859
tagln / transgelin / P37804* / Q01995*ENSDARG0000004540827
tagln2 / transgelin 2 / TAGLN* / Q01995* / P37804* / transgelin*ENSDARG0000003346626
tagln3a / transgelin 3a / TAGLN3* / Q9R1Q8* / Q9UI15* / transgelin 3*ENSDARG0000007980524


Protein motifs (from Interpro)
Interpro ID Name
 IPR000557  Calponin repeat
 IPR001715  Calponin homology domain
 IPR001997  Calponin/LIMCH1
 IPR003096  Smooth muscle protein/calponin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0031032 actomyosin structure organization IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0005516 calmodulin binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr