ENSDARG00000021488


Danio rerio

Features
Gene ID: ENSDARG00000021488
  
Biological name :cyth1b
  
Synonyms : cyth1b / cytohesin 1b
  
Possible biological names infered from orthology : CYTH1 / cytohesin 1 / Q15438 / Q9QX11
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 34051434
Gene end: 34192955
  
Corresponding Affymetrix probe sets: Dr.4031.1.A1_at (Zebrafish Array)   NM_199722_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000127375
Ensembl peptide - ENSDARP00000029832
Ensembl peptide - ENSDARP00000127275
Ensembl peptide - ENSDARP00000157215
NCBI entrez gene - 325586     See in Manteia.
RefSeq - NM_199722
RefSeq Peptide - NP_956016
swissprot - F1R9I9
swissprot - U3JAK7
swissprot - U3JAV6
ZFIN ID - ZDB-GENE-030131-4311
Ensembl - ENSDARG00000021488
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CYTH1ENSGALG00000007093Gallus gallus
 CYTH1ENSG00000108669Homo sapiens
 Cyth1ENSMUSG00000017132Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cyth1a / cytohesin 1a / CYTH1* / Q15438* / cytohesin 1*ENSDARG0000007674290
cyth1a / cyth3b / cytohesin 1a / CYTH3* / O43739* / cytohesin 3*ENSDARG0000000515981
CYTH2 / si:dkey-283b15.4 / P63034* / Q99418* / AC008403.1* / cytohesin 2*ENSDARG0000002880081
cyth3a / cytohesin 3a / CYTH3* / O08967* / O43739* / cytohesin 3*ENSDARG0000000780781
cyth4b / cytohesin 4b / CYTH4* / Q80YW0* / Q9UIA0* / cytohesin 4*ENSDARG0000010398468
cyth4a / cytohesin 4a / CYTH4* / Q80YW0* / Q9UIA0* / cytohesin 4*ENSDARG0000003801163
arfgef1 / ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited) / G3X9K3* / Q9Y6D6* / Brefeldin A-inhibited guanine nucleotide-exchange protein 1 * / ADP ribo...ENSDARG0000006347438
arfgef2 / ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)ENSDARG0000007470237
iqsec1b / IQ motif and Sec7 domain 1b / Q8R0S2* / IQSEC1* / Q6DN90* / IQ motif and Sec7 domain 1* / IQ motif and SEC7 domain-containing protein 1 *ENSDARG0000001655129
LO017700.1 / IQSEC1* / Q6DN90* / IQ motif and Sec7 domain 1*ENSDARG0000007382228
iqsec3b / IQ motif and Sec7 domain 3b / Q9UPP2* / IQSEC3* / Q3TES0* / IQ motif and Sec7 domain 3* / IQ motif and SEC7 domain-containing protein 3 *ENSDARG0000009309127
iqsec3a / IQ motif and Sec7 domain 3a / Q9UPP2* / IQSEC3* / Q3TES0* / IQ motif and Sec7 domain 3* / IQ motif and SEC7 domain-containing protein 3 *ENSDARG0000009985027
iqsec2a / IQ motif and Sec7 domain 2a / IQSEC2* / Q5JU85* / IQ motif and Sec7 domain 2*ENSDARG0000010212527
iqsec2b / IQ motif and Sec7 domain 2b / IQSEC2* / Q5JU85* / IQ motif and Sec7 domain 2*ENSDARG0000007770926
si:ch211-189a21.1 / CYTH3* / O08967* / O43739* / cytohesin 3*ENSDARG0000008982926
fbxo8 / F-box protein 8 / Q9NRD0* / Q9QZN3* / F-box only protein 8 *ENSDARG0000000747716


Protein motifs (from Interpro)
Interpro ID Name
 IPR000904  Sec7 domain
 IPR001849  Pleckstrin homology domain
 IPR011993  PH-like domain superfamily
 IPR023394  Sec7, C-terminal domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0032012 regulation of ARF protein signal transduction IEA
 biological_processGO:0055113 epiboly involved in gastrulation with mouth forming second IGI
 biological_processGO:0065009 regulation of molecular function IEA
 molecular_functionGO:0005086 ARF guanyl-nucleotide exchange factor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr