ENSDARG00000030449


Danio rerio

Features
Gene ID: ENSDARG00000030449
  
Biological name :crabp2b
  
Synonyms : cellular retinoic acid binding protein 2, b / crabp2b
  
Possible biological names infered from orthology : cellular retinoic acid binding protein 2 / CRABP2 / P22935 / P29373
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 8973042
Gene end: 8980038
  
Corresponding Affymetrix probe sets: Dr.21961.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000039596
NCBI entrez gene - 503502     See in Manteia.
swissprot - Q5G9L7
ZFIN ID - ZDB-GENE-050208-52
Ensembl - ENSDARG00000030449
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CRABP2ENSGALG00000029140Gallus gallus
 CRABP2ENSG00000143320Homo sapiens
 Crabp2ENSMUSG00000004885Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
crabp2a / cellular retinoic acid binding protein 2, a / CRABP2* / P22935* / P29373* / cellular retinoic acid binding protein 2*ENSDARG0000007397875
crabp1b / cellular retinoic acid binding protein 1b / CRABP1* / P29762* / P62965* / cellular retinoic acid binding protein 1*ENSDARG0000003590457
crabp1a / cellular retinoic acid binding protein 1a / CRABP1* / P29762* / P62965* / cellular retinoic acid binding protein 1*ENSDARG0000004592656
si:ch211-119o8.7 / RBP1 (1 of many) / RBP1* / P09455* / Q00915* / retinol binding protein 1* / retinol binding protein 1, cellular*ENSDARG0000003874237
rbp1 / retinol binding protein 1b, cellular / Q00915* / P09455* / retinol binding protein 1* / retinol binding protein 1, cellular*ENSDARG0000001807736
rbp7a / retinol binding protein 7a, cellular / RBP7* / Q9EPC5* / Q96R05* / retinol binding protein 7* / retinol binding protein 7, cellular*ENSDARG0000009190634
fabp7b / fatty acid binding protein 7, brain, b / FABP7* / O15540* / P51880* / fatty acid binding protein 7* / Fatty acid-binding protein, brain *ENSDARG0000003465033
rbp2a / retinol binding protein 2a, cellular / RBP2* / Q08652* / P50120* / retinol binding protein 2* / retinol binding protein 2, cellular*ENSDARG0000007003832
rbp5 / retinol binding protein 1a, cellular / P82980* / retinol binding protein 5*ENSDARG0000010148131
fabp3 / fatty acid binding protein 3, muscle and heart / P05413* / P11404* / fatty acid binding protein 3* / Fatty acid-binding protein, heart *ENSDARG0000002329031
rbp7b / retinol binding protein 7b, cellular / RBP7* / Q9EPC5* / Q96R05* / retinol binding protein 7* / retinol binding protein 7, cellular*ENSDARG0000007048631
rbp2b / retinol binding protein 2b, cellularENSDARG0000009377430
fabp7a / fatty acid binding protein 7, brain, a / FABP7* / O15540* / P51880* / fatty acid binding protein 7* / Fatty acid-binding protein, brain *ENSDARG0000000769730
fabp11a / fatty acid binding protein 11a / PMP2* / FABP4* / FABP5* / FABP9* / A6NFH5* / FABP12* / P02689* / P04117* / P15090* / P24526* / Q01469* / Q05816* / Q0Z7S8* / Q9DAK4* / O08716* / G...ENSDARG0000001729930
fabp11b / fatty acid binding protein 11b / PMP2* / FABP4* / FABP5* / FABP9* / A6NFH5* / FABP12* / P02689* / P04117* / P15090* / P24526* / Q01469* / Q05816* / Q0Z7S8* / Q9DAK4* / O08716* / G...ENSDARG0000000231129
CABZ01088982.1 / PMP2* / FABP9* / FABP4* / FABP5* / A6NFH5* / FABP12* / P02689* / P15090* / Q01469* / Q0Z7S8* / peripheral myelin protein 2* / fatty acid binding protein 4* / fatty acid bin...ENSDARG0000010925920


Protein motifs (from Interpro)
Interpro ID Name
 IPR000463  Cytosolic fatty-acid binding
 IPR000566  Lipocalin/cytosolic fatty-acid binding domain
 IPR012674  Calycin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0021575 hindbrain morphogenesis IGI
 biological_processGO:0048385 regulation of retinoic acid receptor signaling pathway IGI
 molecular_functionGO:0008289 lipid binding IEA


Pathways (from Reactome)
Pathway description
Signaling by Retinoic Acid


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000029 hindbrain hindbrain wholly posterioralized , abnormal
Show

 ZFA:0000949 rhombomere 7 rhombomere 7 poorly differentiated , abnormal
Show

 ZFA:0007042 spinal cord neural tube spinal cord neural tube poorly differentiated , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000034893 rarab / Q7ZTI3 / retinoic acid receptor, alpha b / RARA* / P11416* / P10276* / retinoic acid receptor alpha*  / reaction / complex
 ENSDARG00000034117 rarga / Q91392 / retinoic acid receptor gamma a / RARG* / P18911* / P13631* / retinoic acid receptor gamma*  / reaction / complex
 ENSDARG00000057737 rxraa / retinoid X receptor, alpha a / RXRA* / P19793* / P28700* / retinoid X receptor alpha*  / reaction / complex
 ENSDARG00000004697 rxrgb / Q6DHP9 / retinoid X receptor, gamma b / RXRG* / P28705* / P48443* / retinoid X receptor gamma* / Retinoic acid receptor RXR-gamma *  / complex / reaction
 ENSDARG00000056783 raraa / Q90271 / retinoic acid receptor, alpha a / RARA* / P11416* / P10276* / retinoic acid receptor alpha*  / reaction / complex






 

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