Manteia

ENSDARG00000073978

Danio rerio

Features

Gene ID:	ENSDARG00000073978

Biological name :	crabp2a

Synonyms :	cellular retinoic acid binding protein 2, a / crabp2a

Possible biological names infered from orthology :	cellular retinoic acid binding protein 2 / CRABP2 / P22935 / P29373

Species:	Danio rerio

Chr. number:	16
Strand:	-1
Band:
Gene start:	14383479
Gene end:	14397003

Corresponding Affymetrix probe sets:	Dr.20131.1.S1_at (Zebrafish Array)

Cross references:	Ensembl peptide - ENSDARP00000101574 Ensembl peptide - ENSDARP00000134145 NCBI entrez gene - 171480 See in Manteia. swissprot - F6P703 swissprot - Q801Y4 ZFIN ID - ZDB-GENE-020320-4 Ensembl - ENSDARG00000073978

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name	ID	Species
CRABP2	ENSGALG00000029140	Gallus gallus
CRABP2	ENSG00000143320	Homo sapiens
Crabp2	ENSMUSG00000004885	Mus musculus

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
crabp2b / cellular retinoic acid binding protein 2, b / CRABP2* / P22935* / P29373* / cellular retinoic acid binding protein 2*	ENSDARG00000030449	77
crabp1b / cellular retinoic acid binding protein 1b / CRABP1* / P29762* / P62965* / cellular retinoic acid binding protein 1*	ENSDARG00000035904	67
crabp1a / cellular retinoic acid binding protein 1a / CRABP1* / P29762* / P62965* / cellular retinoic acid binding protein 1*	ENSDARG00000045926	64
si:ch211-119o8.7 / RBP1 (1 of many) / RBP1* / P09455* / Q00915* / retinol binding protein 1* / retinol binding protein 1, cellular*	ENSDARG00000038742	41
rbp1 / retinol binding protein 1b, cellular / Q00915* / P09455* / retinol binding protein 1* / retinol binding protein 1, cellular*	ENSDARG00000018077	40
rbp7a / retinol binding protein 7a, cellular / RBP7* / Q9EPC5* / Q96R05* / retinol binding protein 7* / retinol binding protein 7, cellular*	ENSDARG00000091906	36
rbp2a / retinol binding protein 2a, cellular / RBP2* / Q08652* / P50120* / retinol binding protein 2* / retinol binding protein 2, cellular*	ENSDARG00000070038	35
rbp2b / retinol binding protein 2b, cellular	ENSDARG00000093774	35
rbp5 / retinol binding protein 1a, cellular / P82980* / retinol binding protein 5*	ENSDARG00000101481	35
rbp7b / retinol binding protein 7b, cellular / RBP7* / Q9EPC5* / Q96R05* / retinol binding protein 7* / retinol binding protein 7, cellular*	ENSDARG00000070486	35
fabp3 / fatty acid binding protein 3, muscle and heart / P05413* / P11404* / fatty acid binding protein 3* / Fatty acid-binding protein, heart *	ENSDARG00000023290	34
fabp7b / fatty acid binding protein 7, brain, b / FABP7* / O15540* / P51880* / fatty acid binding protein 7* / Fatty acid-binding protein, brain *	ENSDARG00000034650	33
fabp11b / fatty acid binding protein 11b / PMP2* / FABP4* / FABP5* / FABP9* / A6NFH5* / FABP12* / P02689* / P04117* / P15090* / P24526* / Q01469* / Q05816* / Q0Z7S8* / Q9DAK4* / O08716* / G...	ENSDARG00000002311	32
fabp7a / fatty acid binding protein 7, brain, a / FABP7* / O15540* / P51880* / fatty acid binding protein 7* / Fatty acid-binding protein, brain *	ENSDARG00000007697	31
fabp11a / fatty acid binding protein 11a / PMP2* / FABP4* / FABP5* / FABP9* / A6NFH5* / FABP12* / P02689* / P04117* / P15090* / P24526* / Q01469* / Q05816* / Q0Z7S8* / Q9DAK4* / O08716* / G...	ENSDARG00000017299	31
CABZ01088982.1 / PMP2* / FABP9* / FABP4* / FABP5* / A6NFH5* / FABP12* / P02689* / P15090* / Q01469* / Q0Z7S8* / peripheral myelin protein 2* / fatty acid binding protein 4* / fatty acid bin...	ENSDARG00000109259	22

Protein motifs (from Interpro)

Interpro ID	Name
IPR000463	Cytosolic fatty-acid binding
IPR000566	Lipocalin/cytosolic fatty-acid binding domain
IPR012674	Calycin
IPR031259	Intracellular lipid binding protein

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0021575	hindbrain morphogenesis	IGI
biological_process	GO:0048385	regulation of retinoic acid receptor signaling pathway	IGI
molecular_function	GO:0008289	lipid binding	IEA

Pathways (from Reactome)

Pathway description

Signaling by Retinoic Acid

Phenotype (from MGI, Zfin or HPO)

ID	Phenotype	Definition	Genetic BG
ZFA:0000042	midbrain hindbrain boundary	midbrain hindbrain boundary poorly differentiated , abnormal	Show
ZFA:0000948	rhombomere 3	rhombomere 3 poorly differentiated , abnormal	Show

Interacting proteins (from Reactome)

Interactor ID	Name	Interaction type
ENSDARG00000034893	rarab / Q7ZTI3 / retinoic acid receptor, alpha b / RARA* / P11416* / P10276* / retinoic acid receptor alpha*	/ complex / reaction
ENSDARG00000034117	rarga / Q91392 / retinoic acid receptor gamma a / RARG* / P18911* / P13631* / retinoic acid receptor gamma*	/ complex / reaction
ENSDARG00000057737	rxraa / retinoid X receptor, alpha a / RXRA* / P19793* / P28700* / retinoid X receptor alpha*	/ complex / reaction
ENSDARG00000056783	raraa / Q90271 / retinoic acid receptor, alpha a / RARA* / P11416* / P10276* / retinoic acid receptor alpha*	/ complex / reaction
ENSDARG00000004697	rxrgb / Q6DHP9 / retinoid X receptor, gamma b / RXRG* / P28705* / P48443* / retinoid X receptor gamma* / Retinoic acid receptor RXR-gamma *	/ reaction / complex

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr