Manteia

ENSDARG00000045926

Danio rerio

Features

Gene ID:	ENSDARG00000045926

Biological name :	crabp1a

Synonyms :	cellular retinoic acid binding protein 1a / crabp1a

Possible biological names infered from orthology :	cellular retinoic acid binding protein 1 / CRABP1 / P29762 / P62965

Species:	Danio rerio

Chr. number:	25
Strand:	1
Band:
Gene start:	6306885
Gene end:	6337380

Corresponding Affymetrix probe sets:	Dr.12552.1.S1_at (Zebrafish Array) NM_182858_at (Zebrafish Genome Array with custom cdf files)

Cross references:	Ensembl peptide - ENSDARP00000117524 Ensembl peptide - ENSDARP00000067509 NCBI entrez gene - 171479 See in Manteia. RefSeq - NM_182858 RefSeq Peptide - NP_878278 swissprot - E9QD41 swissprot - Q7T0F4 ZFIN ID - ZDB-GENE-020320-3 Ensembl - ENSDARG00000045926

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name	ID	Species
P40220	ENSGALG00000003193	Gallus gallus
CRABP1	ENSG00000166426	Homo sapiens
Crabp1	ENSMUSG00000032291	Mus musculus

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
crabp1b / cellular retinoic acid binding protein 1b / CRABP1* / P29762* / P62965* / cellular retinoic acid binding protein 1*	ENSDARG00000035904	87
crabp2a / cellular retinoic acid binding protein 2, a / CRABP2* / P22935* / P29373* / cellular retinoic acid binding protein 2*	ENSDARG00000073978	66
crabp2b / cellular retinoic acid binding protein 2, b / CRABP2* / P22935* / P29373* / cellular retinoic acid binding protein 2*	ENSDARG00000030449	59
fabp3 / fatty acid binding protein 3, muscle and heart / P05413* / P11404* / fatty acid binding protein 3* / Fatty acid-binding protein, heart *	ENSDARG00000023290	41
si:ch211-119o8.7 / RBP1 (1 of many) / RBP1* / P09455* / Q00915* / retinol binding protein 1* / retinol binding protein 1, cellular*	ENSDARG00000038742	40
rbp1 / retinol binding protein 1b, cellular / Q00915* / P09455* / retinol binding protein 1* / retinol binding protein 1, cellular*	ENSDARG00000018077	39
fabp11a / fatty acid binding protein 11a / PMP2* / FABP4* / FABP5* / FABP9* / A6NFH5* / FABP12* / P02689* / P04117* / P15090* / P24526* / Q01469* / Q05816* / Q0Z7S8* / Q9DAK4* / O08716* / G...	ENSDARG00000017299	38
rbp2a / retinol binding protein 2a, cellular / RBP2* / Q08652* / P50120* / retinol binding protein 2* / retinol binding protein 2, cellular*	ENSDARG00000070038	37
fabp11b / fatty acid binding protein 11b / PMP2* / FABP4* / FABP5* / FABP9* / A6NFH5* / FABP12* / P02689* / P04117* / P15090* / P24526* / Q01469* / Q05816* / Q0Z7S8* / Q9DAK4* / O08716* / G...	ENSDARG00000002311	37
rbp7a / retinol binding protein 7a, cellular / RBP7* / Q9EPC5* / Q96R05* / retinol binding protein 7* / retinol binding protein 7, cellular*	ENSDARG00000091906	36
fabp7b / fatty acid binding protein 7, brain, b / FABP7* / O15540* / P51880* / fatty acid binding protein 7* / Fatty acid-binding protein, brain *	ENSDARG00000034650	36
rbp7b / retinol binding protein 7b, cellular / RBP7* / Q9EPC5* / Q96R05* / retinol binding protein 7* / retinol binding protein 7, cellular*	ENSDARG00000070486	36
rbp5 / retinol binding protein 1a, cellular / P82980* / retinol binding protein 5*	ENSDARG00000101481	36
rbp2b / retinol binding protein 2b, cellular	ENSDARG00000093774	35
fabp7a / fatty acid binding protein 7, brain, a / FABP7* / O15540* / P51880* / fatty acid binding protein 7* / Fatty acid-binding protein, brain *	ENSDARG00000007697	34
CABZ01088982.1 / PMP2* / FABP9* / FABP4* / FABP5* / A6NFH5* / FABP12* / P02689* / P15090* / Q01469* / Q0Z7S8* / peripheral myelin protein 2* / fatty acid binding protein 4* / fatty acid bin...	ENSDARG00000109259	29

Protein motifs (from Interpro)

Interpro ID	Name
IPR000463	Cytosolic fatty-acid binding
IPR000566	Lipocalin/cytosolic fatty-acid binding domain
IPR012674	Calycin
IPR031259	Intracellular lipid binding protein
IPR031279	Cellular retinoic acid-binding protein 1

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0034653	retinoic acid catabolic process	IEA
cellular_component	GO:0005737	cytoplasm	IEA
molecular_function	GO:0001972	retinoic acid binding	IEA
molecular_function	GO:0008289	lipid binding	IEA

Pathways (from Reactome)

Pathway description

RA biosynthesis pathway

Phenotype (from MGI, Zfin or HPO)

Phenotype

Definition

Genetic BG

No match

Interacting proteins (from Reactome)

Interactor ID	Name	Interaction type
ENSDARG00000033999	cyp26a1 / cytochrome P450, family 26, subfamily A, polypeptide 1 / O43174* / cytochrome P450 family 26 subfamily A member 1*	/ reaction
ENSDARG00000056029	cyp26c1 / cytochrome P450, family 26, subfamily C, polypeptide 1 / Q6V0L0* / cytochrome P450 family 26 subfamily C member 1*	/ reaction
ENSDARG00000077121	cyp26b1 / cytochrome P450, family 26, subfamily b, polypeptide 1 / Q811W2* / Q9NR63* / Cytochrome P450 26B1 * / cytochrome P450 family 26 subfamily B member 1*	/ reaction

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr