ENSDARG00000044053


Danio rerio

Features
Gene ID: ENSDARG00000044053
  
Biological name :vsnl1b
  
Synonyms : visinin-like 1b / vsnl1a / vsnl1b
  
Possible biological names infered from orthology : P62760 / P62761 / visinin like 1 / VSNL1
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 6715575
Gene end: 6759149
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000148208
Ensembl peptide - ENSDARP00000038830
Ensembl peptide - ENSDARP00000129664
Ensembl peptide - ENSDARP00000146750
NCBI entrez gene - 561162     See in Manteia.
RefSeq - NM_001327943
RefSeq Peptide - NP_001314871
RefSeq Peptide - NP_001314872
swissprot - E7FCW3
swissprot - Q5TZ35
ZFIN ID - ZDB-GENE-041001-211
ZFIN ID - ZDB-GENE-080225-39
Ensembl - ENSDARG00000044053
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VSNL1ENSGALG00000016464Gallus gallus
 VSNL1ENSG00000163032Homo sapiens
 Vsnl1ENSMUSG00000054459Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
vsnl1a / visinin-like 1a / VSNL1* / P62760* / P62761* / visinin like 1*ENSDARG0000002322896
hpcal4 / hippocalcin like 4 / Q8BGZ1* / Q9UM19*ENSDARG0000007049190
hpca / hippocalcinENSDARG0000001839770
hpcal1 / hippocalcin-like 1 / P37235* / P62748* / Hippocalcin-like protein 1 *ENSDARG0000002276368
ncalda / neurocalcin delta a / NCALD* / Q91X97* / P61601* / neurocalcin delta*ENSDARG0000007068867
ncaldb / Q6AXL4 / neurocalcin delta bENSDARG0000001133466
ncs1b / neuronal calcium sensor 1b / NCS1* / Q8BNY6* / P62166* / neuronal calcium sensor 1*ENSDARG0000005418658
ncs1a / neuronal calcium sensor 1a / NCS1* / Q8BNY6* / P62166* / neuronal calcium sensor 1*ENSDARG0000005522958
rcvrn2 / recoverin 2ENSDARG0000001990243
rcvrna / recoverin a / RCVRN* / P35243* / P34057* / recoverin*ENSDARG0000005222343
rcvrn3 / recoverin 3ENSDARG0000000963740
si:ch211-145b13.5 / KCNIP4* / Q6PHZ8* / Q6PIL6* / Kv channel interacting protein 4* / potassium voltage-gated channel interacting protein 4*ENSDARG0000003725640
rcvrnb / recoverin b / RCVRN* / P35243* / recoverin*ENSDARG0000011182740
kcnip1b / Kv channel interacting protein 1 b / KCNIP1* / Q9JJ57* / Q9NZI2* / Kv channel-interacting protein 1 * / potassium voltage-gated channel interacting protein 1*ENSDARG0000003480839
KCNIP4 / potassium voltage-gated channel interacting protein 4 / Q6PIL6*ENSDARG0000008810039
kcnip2 / Kv channel interacting protein 2 / Q9JJ69* / Q9NS61* / potassium voltage-gated channel interacting protein 2*ENSDARG0000007584638
si:ch211-245j22.3ENSDARG0000004137938
kcnip3b / Kv channel interacting protein 3b, calsenilin / Q9Y2W7* / KCNIP3* / Q9QXT8* / Kv channel interacting protein 3, calsenilin* / potassium voltage-gated channel interacting protein 3*ENSDARG0000001788038
guca1b / guanylate cyclase activator 1B / Q8VBV8* / Q9UMX6* / Guanylyl cyclase-activating protein 2 *ENSDARG0000001339337
guca1a / guanylate cyclase activator 1AENSDARG0000001045436


Protein motifs (from Interpro)
Interpro ID Name
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR018247  EF-Hand 1, calcium-binding site
 IPR029533  Visinin-like protein 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr