ENSDARG00000053194


Danio rerio

Features
Gene ID: ENSDARG00000053194
  
Biological name :pdzd11
  
Synonyms : pdzd11 / PDZ domain containing 11 / Q6NXB2
  
Possible biological names infered from orthology : PDZ domain-containing protein 11 / Q5EBL8 / Q9CZG9
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 33264303
Gene end: 33268494
  
Corresponding Affymetrix probe sets: Dr.15270.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000111909
Ensembl peptide - ENSDARP00000069672
NCBI entrez gene - 405893     See in Manteia.
RefSeq - NM_212957
RefSeq Peptide - NP_998122
swissprot - A8WG12
swissprot - Q6NXB2
ZFIN ID - ZDB-GENE-040426-2544
Ensembl - ENSDARG00000053194
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PDZD11ENSGALG00000004198Gallus gallus
 PDZD11ENSG00000120509Homo sapiens
 Pdzd11ENSMUSG00000015668Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pdzd7a / PDZ domain containing 7a / PDZD7* / Q9H5P4* / PDZ domain containing 7*ENSDARG0000007697431
whrnb / whirlin b / WHRN* / Q80VW5* / Q9P202* / whirlin*ENSDARG0000006816630
ush1c / Usher syndrome 1C / Q9Y6N9* / USH1 protein network component harmonin*ENSDARG0000005187628
whrna / whirlin aENSDARG0000007536227


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007269 neurotransmitter secretion IBA
 biological_processGO:0045199 maintenance of epithelial cell apical/basal polarity IBA
 biological_processGO:1903361 protein localization to basolateral plasma membrane IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol ISS
 cellular_componentGO:0005911 cell-cell junction IBA
 cellular_componentGO:0016323 basolateral plasma membrane ISS
 cellular_componentGO:0045202 synapse IBA
 cellular_componentGO:0098793 presynapse IEA
 molecular_functionGO:0008022 protein C-terminus binding ISS


Pathways (from Reactome)
Pathway description
Biotin transport and metabolism
Vitamin B5 (pantothenate) metabolism
Transport of vitamins, nucleosides, and related molecules
Ion influx/efflux at host-pathogen interface
Ion transport by P-type ATPases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000087693 atox1 / antioxidant 1 copper chaperone / O00244* / O08997* / Copper transport protein ATOX1 *  / reaction
 ENSDARG00000003699 atp7a / ATPase copper transporting alpha / Q04656* / Q64430* / Copper-transporting ATPase 1 *  / complex
 ENSDARG00000014599 slc5a6b / solute carrier family 5 (sodium/multivitamin and iodide cotransporter), member 6 / Q9Y289* / SLC5A6* / Q5U4D8* / solute carrier family 5 member 6* / Sodium-dependent multivitamin ...  / complex






 

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