ENSDARG00000059079


Danio rerio

Features
Gene ID: ENSDARG00000059079
  
Biological name :vps25
  
Synonyms : vacuolar protein sorting 25 homolog (S. cerevisiae) / vps25
  
Possible biological names infered from orthology : Q9BRG1 / Q9CQ80 / vacuolar protein sorting 25 / vacuolar protein sorting 25 homolog
  
Species: Danio rerio
  
Chr. number: 12
Strand: -1
Band:
Gene start: 3714076
Gene end: 3721957
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000126886
NCBI entrez gene - 407684     See in Manteia.
swissprot - F1QSR5
ZFIN ID - ZDB-GENE-050506-30
Ensembl - ENSDARG00000059079
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VPS25ENSGALG00000034262Gallus gallus
 VPS25ENSG00000131475Homo sapiens
 Vps25ENSMUSG00000078656Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR008570  ESCRT-II complex, Vps25 subunit
 IPR011991  ArsR-like helix-turn-helix domain
 IPR014041  ESCRT-II complex, Vps25 subunit, N-terminal winged helix


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0071985 multivesicular body sorting pathway IEA
 cellular_componentGO:0000814 ESCRT II complex IEA


Pathways (from Reactome)
Pathway description
Endosomal Sorting Complex Required For Transport (ESCRT)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000058746 ubap1 / ubiquitin associated protein 1 / Q8BH48* / Q9NZ09*  / reaction
 ENSDARG00000011897 tsg101b / tumor susceptibility 101b / Q99816* / TSG101* / Q61187* / tumor susceptibility 101* / tumor susceptibility gene 101*  / reaction
 ENSDARG00000059079 vps25 / vacuolar protein sorting 25 homolog (S. cerevisiae) / Q9BRG1* / Q9CQ80* / vacuolar protein sorting 25* / vacuolar protein sorting 25 homolog*  / complex
 ENSDARG00000031836 vps37c / vacuolar protein sorting 37 homolog C (S. cerevisiae) / Q8R105* / A5D8V6* / VPS37C, ESCRT-I subunit* / vacuolar protein sorting 37C*  / reaction
 ENSDARG00000097055 si:ch211-284f22.3 / Q86XT2* / Q810I0* / VPS37D* / VPS37D, ESCRT-I subunit* / vacuolar protein sorting 37D*  / reaction
 ENSDARG00000039319 vps37b / vacuolar protein sorting 37 homolog B (S. cerevisiae) / Q8R0J7* / Q9H9H4* / VPS37B, ESCRT-I subunit* / vacuolar protein sorting 37B*  / reaction
 ENSDARG00000103203 vps28 / vacuolar protein sorting 28 (yeast) / Q9D1C8* / Q9UK41* / VPS28, ESCRT-I subunit* / vacuolar protein sorting 28*  / reaction
 ENSDARG00000058076 snf8 / Q5U3V9 / SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) / Q9CZ28* / Q96H20* / SNF8, ESCRT-II complex subunit* / Mus musculus SNF8, ESCRT-II complex subunit, homolog (S. cere...  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr