ENSGALG00000034262


Gallus gallus

Features
Gene ID: ENSGALG00000034262
  
Biological name :VPS25
  
Synonyms : vacuolar protein sorting 25 homolog / VPS25
  
Possible biological names infered from orthology : Q9BRG1 / Q9CQ80 / vacuolar protein sorting 25
  
Species: Gallus gallus
  
Chr. number: 27
Strand: 1
Band:
Gene start: 5455243
Gene end: 5457650
  
Corresponding Affymetrix probe sets: Gga.8289.1.S1_a_at (Chicken Array)   Gga.8289.3.A1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000044578
NCBI entrez gene - 420021     See in Manteia.
RefSeq - XM_003642814
RefSeq - XM_015299633
swissprot - A0A1D5NW43
Ensembl - ENSGALG00000034262
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vps25ENSDARG00000059079Danio rerio
 VPS25ENSG00000131475Homo sapiens
 Vps25ENSMUSG00000078656Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR008570  ESCRT-II complex, Vps25 subunit
 IPR011991  ArsR-like helix-turn-helix domain
 IPR014041  ESCRT-II complex, Vps25 subunit, N-terminal winged helix


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007175 negative regulation of epidermal growth factor-activated receptor activity IEA
 biological_processGO:0071985 multivesicular body sorting pathway IEA
 cellular_componentGO:0000814 ESCRT II complex IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0010008 endosome membrane IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0047485 protein N-terminus binding IEA


Pathways (from Reactome)
Pathway description
Endosomal Sorting Complex Required For Transport (ESCRT)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000037716 UBA52 / ubiquitin A-52 residue ribosomal protein fusion product 1 / P62984* / P62987* / Gm5239* / Gm11808* / predicted gene 11808*  / complex / reaction
 ENSGALG00000013646 VPS37A / VPS37A, ESCRT-I subunit / Q8CHS8* / Q8NEZ2* / vacuolar protein sorting 37A*  / reaction
 ENSGALG00000003743 VPS37B / VPS37B, ESCRT-I subunit / Q8R0J7* / Q9H9H4* / vacuolar protein sorting 37B*  / reaction
 ENSGALG00000038541 VPS37C / vacuolar protein sorting-associated protein 37C / Q8R105* / A5D8V6* / VPS37C, ESCRT-I subunit* / vacuolar protein sorting 37C*  / reaction
 ENSGALG00000006312 TSG101 / tumor susceptibility 101 / Q61187* / Q99816* / tumor susceptibility gene 101*  / reaction
 ENSGALG00000001309 SNF8 / SNF8, ESCRT-II complex subunit / Q96H20* / Q9CZ28* / Mus musculus SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) (Snf8), transcript variant 2, mRNA.*  / complex
 ENSGALG00000036790 P79781 / RPS27A / Ubiquitin-40S ribosomal protein S27a Ubiquitin 40S ribosomal protein S27a / P62983* / P62979* / AL136454.1* / ribosomal protein S27a*  / reaction / complex
 ENSGALG00000000950 MVB12B / multivesicular body subunit 12B / Q6KAU4* / Q9H7P6*  / reaction
 ENSGALG00000034262 VPS25 / vacuolar protein sorting 25 homolog / Q9BRG1* / Q9CQ80* / vacuolar protein sorting 25*  / complex






 

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