ENSDARG00000103203


Danio rerio

Features
Gene ID: ENSDARG00000103203
  
Biological name :vps28
  
Synonyms : vacuolar protein sorting 28 (yeast) / vps28
  
Possible biological names infered from orthology : Q9D1C8 / Q9UK41 / vacuolar protein sorting 28 / VPS28, ESCRT-I subunit
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 46222428
Gene end: 46238624
  
Corresponding Affymetrix probe sets: Dr.6308.1.S1_at (Zebrafish Array)   NM_200590_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000132874
Ensembl peptide - ENSDARP00000152120
Ensembl peptide - ENSDARP00000130302
NCBI entrez gene - 393562     See in Manteia.
RefSeq - NM_200590
RefSeq Peptide - NP_956884
swissprot - A0A0R4IAK2
swissprot - Q6PH25
ZFIN ID - ZDB-GENE-040426-1527
Ensembl - ENSDARG00000103203
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VPS28ENSG00000160948Homo sapiens
 Vps28ENSMUSG00000115987Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007143  Vacuolar protein sorting-associated Vps28
 IPR017898  Vacuolar protein sorting-associated, VPS28, N-terminal
 IPR017899  Vacuolar protein sorting-associated, VPS28, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0032509 endosome transport via multivesicular body sorting pathway IEA
 biological_processGO:0043328 protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IEA
 cellular_componentGO:0000813 ESCRT I complex IBA
 cellular_componentGO:0005768 endosome IEA


Pathways (from Reactome)
Pathway description
Endosomal Sorting Complex Required For Transport (ESCRT)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000011897 tsg101b / tumor susceptibility 101b / Q99816* / TSG101* / Q61187* / tumor susceptibility 101* / tumor susceptibility gene 101*  / complex
 ENSDARG00000005318 stam2 / signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 / O75886* / O88811* / signal transducing adaptor molecule 2*  / reaction
 ENSDARG00000058076 snf8 / Q5U3V9 / SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) / Q9CZ28* / Q96H20* / SNF8, ESCRT-II complex subunit* / Mus musculus SNF8, ESCRT-II complex subunit, homolog (S. cere...  / reaction
 ENSDARG00000039319 vps37b / vacuolar protein sorting 37 homolog B (S. cerevisiae) / Q8R0J7* / Q9H9H4* / VPS37B, ESCRT-I subunit* / vacuolar protein sorting 37B*  / complex
 ENSDARG00000031836 vps37c / vacuolar protein sorting 37 homolog C (S. cerevisiae) / Q8R105* / A5D8V6* / VPS37C, ESCRT-I subunit* / vacuolar protein sorting 37C*  / complex
 ENSDARG00000058746 ubap1 / ubiquitin associated protein 1 / Q8BH48* / Q9NZ09*  / complex
 ENSDARG00000020960 hgs / hepatocyte growth factor-regulated tyrosine kinase substrate / O14964* / hepatocyte growth factor-regulated tyrosine kinase substrate isoform 2 *  / reaction
 ENSDARG00000002127 stam / signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 / P70297* / Q92783* / signal transducing adaptor molecule*  / reaction
 ENSDARG00000097055 si:ch211-284f22.3 / Q86XT2* / Q810I0* / VPS37D* / VPS37D, ESCRT-I subunit* / vacuolar protein sorting 37D*  / complex
 ENSDARG00000059079 vps25 / vacuolar protein sorting 25 homolog (S. cerevisiae) / Q9BRG1* / Q9CQ80* / vacuolar protein sorting 25* / vacuolar protein sorting 25 homolog*  / reaction






 

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