ENSDARG00000059936


Danio rerio

Features
Gene ID: ENSDARG00000059936
  
Biological name :herc4
  
Synonyms : HECT and RLD domain containing E3 ubiquitin protein ligase 4 / herc4
  
Possible biological names infered from orthology : Probable E3 ubiquitin-protein ligase HERC4 / Q5GLZ8 / Q6PAV2
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 50387365
Gene end: 50446872
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000078318
NCBI entrez gene - 557513     See in Manteia.
RefSeq - XM_005173035
swissprot - E7F700
ZFIN ID - ZDB-GENE-070801-1
Ensembl - ENSDARG00000059936
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HERC4ENSGALG00000003861Gallus gallus
 HERC4ENSG00000148634Homo sapiens
 Herc4ENSMUSG00000020064Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
herc3 / HECT and RLD domain containing E3 ubiquitin protein ligase 3 / Q15034*ENSDARG0000007588752
slc47a2.2 / solute carrier family 47 (multidrug and toxin extrusion), member 2.2ENSDARG0000007413635
si:ch211-281g13.5ENSDARG0000007405235
si:ch211-281g13.4ENSDARG0000007538934
HERC5 / si:ch73-190m4.1 / HERC6* / F2Z461* / Q9UII4* / Q8IVU3* / AC098582.1* / E3 ISG15--protein ligase Herc6 * / HECT and RLD domain containing E3 ubiquitin protein ligase 5* / HECT and RL...ENSDARG0000007578532
hectd2 / HECT domain containing 2 / Q5U5R9* / Q8CDU6* / HECT domain E3 ubiquitin protein ligase 2* / Probable E3 ubiquitin-protein ligase HECTD2 *ENSDARG0000006119421
herc2 / HECT and RLD domain containing E3 ubiquitin protein ligase 2 / O95714* / Q4U2R1* / E3 ubiquitin-protein ligase HERC2 *ENSDARG0000007384121
ube3a / ubiquitin protein ligase E3A / O08759* / Q05086*ENSDARG0000005573720
herc1 / HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 / Q15751*ENSDARG0000007790120
hectd3 / HECT domain containing 3 / Q3U487* / Q5T447* / E3 ubiquitin-protein ligase HECTD3 * / HECT domain E3 ubiquitin protein ligase 3*ENSDARG0000003890513
rccd1 / RCC1 domain containing 1ENSDARG000000710746
herc7 / hect domain and RLD 7ENSDARG000000989060


Protein motifs (from Interpro)
Interpro ID Name
 IPR000408  Regulator of chromosome condensation, RCC1
 IPR000569  HECT domain
 IPR009091  Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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