ENSDARG00000077901


Danio rerio

Features
Gene ID: ENSDARG00000077901
  
Biological name :herc1
  
Synonyms : HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 / herc1
  
Possible biological names infered from orthology : Q15751
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 29189100
Gene end: 29271738
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000098798
Ensembl peptide - ENSDARP00000142936
Ensembl peptide - ENSDARP00000142861
Ensembl peptide - ENSDARP00000142740
Ensembl peptide - ENSDARP00000140961
NCBI entrez gene - 336598     See in Manteia.
RefSeq - XM_009303240
RefSeq - XM_021477835
swissprot - A0A1D5NSP4
swissprot - A0A1D5NSC7
swissprot - A0A0R4IYT9
swissprot - E7FBA7
swissprot - A0A1D5NSW5
ZFIN ID - ZDB-GENE-030131-8542
Ensembl - ENSDARG00000077901
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HERC1ENSGALG00000003381Gallus gallus
 HERC1ENSG00000103657Homo sapiens
 Herc1ENSMUSG00000038664Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
herc2 / HECT and RLD domain containing E3 ubiquitin protein ligase 2 / O95714* / Q4U2R1* / E3 ubiquitin-protein ligase HERC2 *ENSDARG0000007384124
herc7 / hect domain and RLD 7ENSDARG000000989065
herc3 / HECT and RLD domain containing E3 ubiquitin protein ligase 3 / Q15034*ENSDARG000000758874
herc4 / HECT and RLD domain containing E3 ubiquitin protein ligase 4 / Q5GLZ8*ENSDARG000000599364
si:ch211-281g13.5ENSDARG000000740524
si:ch211-281g13.4ENSDARG000000753894
slc47a2.2 / solute carrier family 47 (multidrug and toxin extrusion), member 2.2ENSDARG000000741364
HERC5 / si:ch73-190m4.1 / HERC6* / F2Z461* / Q9UII4* / Q8IVU3* / AC098582.1* / E3 ISG15--protein ligase Herc6 * / HECT and RLD domain containing E3 ubiquitin protein ligase 5* / HECT and RL...ENSDARG000000757853
hectd3 / HECT domain containing 3 / Q3U487* / Q5T447* / E3 ubiquitin-protein ligase HECTD3 * / HECT domain E3 ubiquitin protein ligase 3*ENSDARG000000389053
ube3a / ubiquitin protein ligase E3A / O08759* / Q05086*ENSDARG000000557372
hectd2 / HECT domain containing 2 / Q5U5R9* / Q8CDU6* / HECT domain E3 ubiquitin protein ligase 2* / Probable E3 ubiquitin-protein ligase HECTD2 *ENSDARG000000611942
rccd1 / RCC1 domain containing 1ENSDARG000000710742


Protein motifs (from Interpro)
Interpro ID Name
 IPR000408  Regulator of chromosome condensation, RCC1
 IPR000569  HECT domain
 IPR001680  WD40 repeat
 IPR001870  B30.2/SPRY domain
 IPR003877  SPRY domain
 IPR009091  Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
 IPR011989  Armadillo-like helical
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR016186  C-type lectin-like/link domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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