ENSG00000103657


Homo sapiens

Features
Gene ID: ENSG00000103657
  
Biological name :HERC1
  
Synonyms : HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 / HERC1 / Q15751
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: -1
Band: q22.31
Gene start: 63608618
Gene end: 63833942
  
Corresponding Affymetrix probe sets: 218306_s_at (Human Genome U133 Plus 2.0 Array)   240702_at (Human Genome U133 Plus 2.0 Array)   240703_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000453603
Ensembl peptide - ENSP00000453196
Ensembl peptide - ENSP00000453937
Ensembl peptide - ENSP00000390158
Ensembl peptide - ENSP00000452654
Ensembl peptide - ENSP00000452671
Ensembl peptide - ENSP00000452969
Ensembl peptide - ENSP00000453010
Ensembl peptide - ENSP00000453086
NCBI entrez gene - 8925     See in Manteia.
OMIM - 605109
RefSeq - XM_017022705
RefSeq - NM_003922
RefSeq - XM_017022699
RefSeq - XM_017022700
RefSeq - XM_017022701
RefSeq - XM_017022702
RefSeq - XM_017022703
RefSeq - XM_017022704
RefSeq Peptide - NP_003913
swissprot - A0A024R5W0
swissprot - Q15751
swissprot - H0YK45
swissprot - H0YK60
swissprot - H0YKW7
swissprot - H0YL07
swissprot - H0YL74
swissprot - H0YLG2
swissprot - H0YNB1
swissprot - H0YMH0
Ensembl - ENSG00000103657
  
Related genetic diseases (OMIM): 617011 - Macrocephaly, dysmorphic facies, and psychomotor retardation, 617011
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 herc1ENSDARG00000077901Danio rerio
 HERC1ENSGALG00000003381Gallus gallus
 Herc1ENSMUSG00000038664Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HERC2 / O95714 / HECT and RLD domain containing E3 ubiquitin protein ligase 2ENSG0000012873125
HERC3 / Q15034 / HECT and RLD domain containing E3 ubiquitin protein ligase 3ENSG000001386414
HERC4 / Q5GLZ8 / HECT and RLD domain containing E3 ubiquitin protein ligase 4ENSG000001486344
HERC5 / Q9UII4 / HECT and RLD domain containing E3 ubiquitin protein ligase 5ENSG000001386464
HERC6 / Q8IVU3 / HECT and RLD domain containing E3 ubiquitin protein ligase family member 6ENSG000001386424
HECTD3 / Q5T447 / HECT domain E3 ubiquitin protein ligase 3ENSG000001261073
RCCD1 / A6NED2 / RCC1 domain containing 1ENSG000001669652
UBE3A / Q05086 / ubiquitin protein ligase E3AENSG000001140622
HECTD2 / Q5U5R9 / HECT domain E3 ubiquitin protein ligase 2ENSG000001653382
AC098582.1ENSG000002853850


Protein motifs (from Interpro)
Interpro ID Name
 IPR000408  Regulator of chromosome condensation, RCC1
 IPR000569  HECT domain
 IPR001680  WD40 repeat
 IPR001870  B30.2/SPRY domain
 IPR003877  SPRY domain
 IPR009091  Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR016186  C-type lectin-like/link domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR035768  HERC1, SPRY domain
 IPR035983  HECT, E3 ligase catalytic domain
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010507 negative regulation of autophagy IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0021702 cerebellar Purkinje cell differentiation IEA
 biological_processGO:0031175 neuron projection development IEA
 biological_processGO:0050885 neuromuscular process controlling balance IEA
 biological_processGO:0065009 regulation of molecular function IEA
 cellular_componentGO:0005737 cytoplasm TAS
 cellular_componentGO:0005794 Golgi apparatus TAS
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0005085 guanyl-nucleotide exchange factor activity IEA
 molecular_functionGO:0005086 ARF guanyl-nucleotide exchange factor activity TAS
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0016740 transferase activity IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000098 Increased body height 
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000238 Hydrocephalus 
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000276 Long face 
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000325 Triangular facies 
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000400 Large ears 
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 HP:0000426 Prominent nasal bridge 
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 HP:0000472 Long neck 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000520 Proptosis 
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 HP:0000582 Upslanting palpebral fissures 
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 HP:0001166 Arachnodactyly "Abnormally long and slender fingers ("spider fingers")." [HPO:curators]
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 HP:0001176 Large hands 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001272 Cerebellar atrophy 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001355 Megalencephaly "The presence of an unusually large, and usually malfunctioning brain." [HPO:curators]
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 HP:0001388 Joint laxity 
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 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
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 HP:0001833 Large feet 
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002066 Gait ataxia "Impairment of the ability to coordinate the movements required for normal walking." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002808 Kyphosis 
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 HP:0003307 Hyperlordosis 
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 HP:0003577 Onset at birth 
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 HP:0007074 Thick corpus callosum 
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 HP:0011220 Prominent forehead "Forward prominence of the entire forehead, due to protrusion of the frontal bone." [pmid:19125436]
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 HP:0045075 Sparse eyebrow "Decreased density/number of eyebrow hairs." [HPO:skoehler]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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