ENSDARG00000062081


Danio rerio

Features
Gene ID: ENSDARG00000062081
  
Biological name :tbc1d1
  
Synonyms : tbc1d1 / TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1
  
Possible biological names infered from orthology : Q60949 / Q86TI0 / TBC1 domain family member 1
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 18642117
Gene end: 18772311
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000156910
Ensembl peptide - ENSDARP00000121325
Ensembl peptide - ENSDARP00000121624
Ensembl peptide - ENSDARP00000123160
Ensembl peptide - ENSDARP00000144768
Ensembl peptide - ENSDARP00000148806
NCBI entrez gene - 561193     See in Manteia.
RefSeq - XM_021476243
swissprot - F1QET6
swissprot - F1R309
swissprot - F1R5W8
ZFIN ID - ZDB-GENE-060710-1
Ensembl - ENSDARG00000062081
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TBC1D1ENSGALG00000039380Gallus gallus
 Q86TI0ENSG00000065882Homo sapiens
 Q60949ENSMUSG00000029174Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tbc1d4 / TBC1 domain family, member 4 / O60343*ENSDARG0000007515641
rabgap1 / RAB GTPase activating protein 1 / Q9Y3P9*ENSDARG0000009896715
evi5b / ecotropic viral integration site 5b / EVI5* / O60447* / ecotropic viral integration site 5*ENSDARG0000007083910
EVI5L / si:ch211-239f4.1 / Q96CN4* / ecotropic viral integration site 5 like* / Mus musculus ecotropic viral integration site 5 like (Evi5l), transcript variant 2, mRNA.*ENSDARG0000005276610
tbc1d12b / TBC1 domain family, member 12b / O60347* / TBC1D12* / TBC1 domain family member 12*ENSDARG000000737719
tbc1d14 / TBC1 domain family, member 14 / Q9P2M4*ENSDARG000000035209
evi5a / ecotropic viral integration site 5aENSDARG000000776668
AL935174.4 / O60347* / TBC1D12* / TBC1 domain family member 12*ENSDARG000001120882
rabgap1l / RAB GTPase activating protein 1-likeENSDARG000000617572
rabgap1l2 / RAB GTPase activating protein 1-like 2 / A6H6A9* / B7ZAP0* / Q5R372* / RABGAP1L* / RAB GTPase activating protein 1 like*ENSDARG000000603152


Protein motifs (from Interpro)
Interpro ID Name
 IPR000195  Rab-GTPase-TBC domain
 IPR006020  PTB/PI domain
 IPR011993  PH-like domain superfamily
 IPR021785  Domain of unknown function DUF3350


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0031338 regulation of vesicle fusion IBA
 biological_processGO:0090630 activation of GTPase activity IBA
 cellular_componentGO:0005622 intracellular IBA
 cellular_componentGO:0012505 endomembrane system IBA
 molecular_functionGO:0005096 GTPase activator activity IBA
 molecular_functionGO:0017137 Rab GTPase binding IBA


Pathways (from Reactome)
Pathway description
Translocation of SLC2A4 (GLUT4) to the plasma membrane


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr