ENSDARG00000079327


Danio rerio

Features
Gene ID: ENSDARG00000079327
  
Biological name :hmcn2
  
Synonyms : hemicentin 2 / hmcn2
  
Possible biological names infered from orthology : A2AJ76 / Q8NDA2
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 32613916
Gene end: 32785627
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000121073
Ensembl peptide - ENSDARP00000121770
Ensembl peptide - ENSDARP00000102597
Ensembl peptide - ENSDARP00000116008
Ensembl peptide - ENSDARP00000117938
Ensembl peptide - ENSDARP00000118815
NCBI entrez gene - 565032     See in Manteia.
RefSeq - XM_001920466
swissprot - F1Q9T8
swissprot - F1QYL6
swissprot - F1R2Y2
swissprot - F1R747
swissprot - M9MMB9
swissprot - E7F3V2
ZFIN ID - ZDB-GENE-030131-9765
Ensembl - ENSDARG00000079327
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HMCN2ENSG00000148357Homo sapiens
 Hmcn2ENSMUSG00000055632Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hmcn1 / hemicentin 1 / D3YXG0* / Q96RW7*ENSDARG0000001693645
hmcn2 / hemicentin 2ENSDARG0000008606019
ttn.1 / titin, tandem duplicate 1 / TTN* / titin* / A2ASS6* / Q8WZ42*ENSDARG0000000056316
ttn.2 / titin, tandem duplicate 2 / TTN* / titin* / A2ASS6* / Q8WZ42*ENSDARG0000002821315
igsf10 / immunoglobulin superfamily, member 10 / Q3V1M1* / Q6WRI0*ENSDARG0000007749710
mxra5b / matrix-remodelling associated 5b / MXRA5* / Q9NR99* / matrix remodeling associated 5*ENSDARG000000763099
mxra5a / matrix-remodelling associated 5a / MXRA5* / Q9NR99* / matrix remodeling associated 5*ENSDARG000000748159
si:ch211-159i8.4ENSDARG000000763329
obsl1a / obscurin-like 1a / OBSL1* / O75147* / obscurin like 1*ENSDARG000000036846
obsl1b / obscurin-like 1b / OBSL1* / D3YYU8* / O75147* / obscurin like 1* / Obscurin-like protein 1 *ENSDARG000000773886
obscnb / obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF b / OBSCN* / Q5VST9* / obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF*ENSDARG000000221014
palld / palladin, cytoskeletal associated protein / Q8WX93* / Q9ET54* / Palladin *ENSDARG000000400094
CU928131.1ENSDARG000001092623
myot / myotilinENSDARG000000763122


Protein motifs (from Interpro)
Interpro ID Name
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000742  EGF-like domain
 IPR000884  Thrombospondin type-1 (TSP1) repeat
 IPR001881  EGF-like calcium-binding domain
 IPR002035  von Willebrand factor, type A
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR006605  G2 nidogen/fibulin G2F
 IPR007110  Immunoglobulin-like domain
 IPR009017  Green fluorescent protein
 IPR009030  Growth factor receptor cysteine-rich domain superfamily
 IPR013032  EGF-like, conserved site
 IPR013098  Immunoglobulin I-set
 IPR013106  Immunoglobulin V-set domain
 IPR013783  Immunoglobulin-like fold
 IPR018097  EGF-like calcium-binding, conserved site
 IPR026823  Complement Clr-like EGF domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030198 extracellular matrix organization IGI
 biological_processGO:0035122 embryonic medial fin morphogenesis IGI
 biological_processGO:0043589 skin morphogenesis IGI
 biological_processGO:0090497 mesenchymal cell migration IGI
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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