ENSDARG00000087863


Danio rerio

Features
Gene ID: ENSDARG00000087863
  
Biological name :cd44a
  
Synonyms : cd44a / CD44 molecule (Indian blood group) a
  
Possible biological names infered from orthology : CD44 / CD44 molecule (Indian blood group) / P16070
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 49882750
Gene end: 49892991
  
Corresponding Affymetrix probe sets: Dr.1121.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000110970
NCBI entrez gene - 797357     See in Manteia.
RefSeq - XM_001922456
swissprot - E7F6T0
ZFIN ID - ZDB-GENE-110429-1
Ensembl - ENSDARG00000087863
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CD44ENSGALG00000039080Gallus gallus
 CD44ENSG00000026508Homo sapiens
 Cd44ENSMUSG00000005087Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cd44b / CD44 molecule (Indian blood group) b / CD44* / P16070* / CD44 molecule (Indian blood group)*ENSDARG0000008989215
lyve1a / lymphatic vessel endothelial hyaluronic receptor 1aENSDARG0000007583312
lyve1b / lymphatic vessel endothelial hyaluronic receptor 1b / LYVE1* / Q8BHC0* / Q9Y5Y7* / lymphatic vessel endothelial hyaluronan receptor 1* / Lymphatic vessel endothelial hyaluronic aci...ENSDARG0000006248311


Protein motifs (from Interpro)
Interpro ID Name
 IPR000538  Link domain
 IPR001231  CD44 antigen
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001944 vasculature development IGI
 biological_processGO:0007155 cell adhesion IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005540 hyaluronic acid binding IEA


Pathways (from Reactome)
Pathway description
Degradation of the extracellular matrix
Cell surface interactions at the vascular wall
Hyaluronan uptake and degradation
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000009123 sele / selectin E / P16581* / selectin, endothelial cell*  / reaction / complex
 ENSDARG00000087863 cd44a / CD44 molecule (Indian blood group) a / CD44* / P16070* / CD44 molecule (Indian blood group)*  / reaction / complex
 ENSDARG00000062997 hyal2b / hyaluronoglucosaminidase 2b / HYAL2* / Q12891* / O35632* / Hyaluronidase-2 * / hyaluronoglucosaminidase 2*  / reaction / complex
 ENSDARG00000059931 hyal2a / hyaluronoglucosaminidase 2a / HYAL2* / Q12891* / O35632* / Hyaluronidase-2 * / hyaluronoglucosaminidase 2*  / reaction / complex
 ENSDARG00000105023 selplg / selectin P ligand / Q14242*  / complex / reaction
 ENSDARG00000052859 chp1 / calcineurin-like EF-hand protein 1 / P61022* / Q99653* / Calcineurin B homologous protein 1 *  / complex / reaction
 ENSDARG00000089892 cd44b / CD44 molecule (Indian blood group) b / CD44* / P16070* / CD44 molecule (Indian blood group)*  / complex / reaction






 

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